RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 VENTXO95231 258 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ITGA5P08648 1049 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 NPIPA8P0DM63 369 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 H2AFXP16104 143 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ATP12AP54707 1039 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 FOXG1P55316 489 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 CBFBQ13951 182 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 MLC1Q15049 377 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZSWIM7Q19AV6 140 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 NDUFAF6Q330K2 333 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 TIGD2Q4W5G0 525 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF385BQ569K4 471 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ABLIM2Q6H8Q1 611 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SLC22A9Q8IVM8 553 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 C17orf78Q8N4C9 275 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 C3orf56Q8N813 242 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ANKS4BQ8N8V4 417 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 LINC01356Q8N9X3 169 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 RFWD2Q8NHY2 731 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 IFT81Q8WYA0 676 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 CDS1Q92903 461 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 PPCDCQ96CD2 204 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 OCEL1Q9H607 264 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 REEP4Q9H6H4 257 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SLC17A5Q9NRA2 495 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SERINC1Q9NRX5 453 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZDHHC18Q9NUE0 388 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SH3BP4Q9P0V3 963 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF180Q9UJW8 692 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 MOKQ9UQ07 419 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 AMDHD2Q9Y303 409 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 DTNAQ9Y4J8 743 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 NPIPB9F8W1W9 429 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 PDLIM1O00151 329 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 DNAJA2O60884 412 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 STAMBPO95630 424 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 HMGN2P05204 90 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 TACSTD2P09758 323 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 GIFP27352 417 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 SERPINF1P36955 418 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 CHN2P52757 468 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 CDC73Q6P1J9 531 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 UGT2A3Q6UWM9 527 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 SLC46A3Q7Z3Q1 461 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 LCA5Q86VQ0 697 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 RELL1Q8IUW5 271 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 C1orf162Q8NEQ5 155 aaPredicted RBP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 OR52E4Q8NGH9 312 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 DCAKDQ8WVC6 231 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 ST8SIA1Q92185 356 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 FAM120BQ96EK7 910 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 CHMP6Q96FZ7 201 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 QRSL1Q9H0R6 528 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 GSTO2Q9H4Y5 243 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 ZCCHC3Q9NUD5 404 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 DCTN4Q9UJW0 460 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 CCL27Q9Y4X3 112 aa10.15□□□□□ -0.78
CLSTN3-209ENST00000539982 PKD1L1Q8TDX9 2849 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 B9A039 149 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 POC1B-GALNT4F8VUJ3 575 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 H3BQF6 201 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 AKAP10O43572 662 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 LILRA1O75019 489 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 WNT11O96014 354 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SNRPAP09012 282 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PCMT1P22061 227 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PRPH2P23942 346 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 APEX1P27695 318 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 IL2RGP31785 369 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 CCR4P51679 360 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SLC16A1P53985 500 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 CDH15P55291 814 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SESN3P58005 492 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PRPS1P60891 318 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SLC25A3Q00325 362 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 TGFBR3Q03167 851 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PDE7AQ13946 482 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 LASP1Q14847 261 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SYT14P1Q58G82 188 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 DCST2Q5T1A1 773 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 C9orf135Q5VTT2 229 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 DEF8Q6ZN54 512 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 GSPT2Q8IYD1 628 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 TMCO5AQ8N6Q1 288 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 ZNF614Q8N883 585 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SEMA6DQ8NFY4 1073 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PIGXQ8TBF5 258 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 ADAMTS15Q8TE58 950 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 SLC25A43Q8WUT9 341 aaPredicted RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 ZHX1-C8orf76Q96EF9 292 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 THUMPD3Q9BV44 507 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 RAB1BQ9H0U4 201 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 PARPBPQ9NWS1 579 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 UPB1Q9UBR1 384 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 TGP01266 2768 aa10.14□□□□□ -0.79
CLSTN3-209ENST00000539982 TMEM89A2RUT3 159 aa10.13□□□□□ -0.79
CLSTN3-209ENST00000539982 CRCPO75575 148 aa10.13□□□□□ -0.79
CLSTN3-209ENST00000539982 SNUPNO95149 360 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms