RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ADH1BP00325 375 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 GABRA1P14867 456 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 FGF9P31371 208 aaPredicted RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 PCGF2P35227 344 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 KCNJ5P48544 419 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 RPS26P62854 115 aaKnown RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 SCARB2Q14108 478 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 ZNF791Q3KP31 576 aaPredicted RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 SYT14P1Q58G82 188 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 SZRD1Q7Z422 152 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 SERPINA12Q8IW75 414 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 UBE2E3Q969T4 207 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 MRPL38Q96DV4 380 aaKnown RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 WDR34Q96EX3 536 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 PEX11GQ96HA9 241 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 PAPOLGQ9BWT3 736 aaKnown RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 KLHL1Q9NR64 748 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 MYO10Q9HD67 2058 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 POM121BA6NF01 834 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 LCMT2O60294 686 aaKnown RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 SEMA7AO75326 666 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 SERPINA3P01011 423 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 WNT1P04628 370 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 RPN2P04844 631 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 PTGER1P34995 402 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 PTGFRP43088 359 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 KIR2DL1P43626 348 aaPredicted RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 MLF2Q15773 248 aaPredicted RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 C9orf152Q5JTZ5 239 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 FAM71E1Q6IPT2 247 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 ZNF425Q6IV72 752 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 SLC9B2Q86UD5 537 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 NR2C2APQ86WQ0 139 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 LDLRAD3Q86YD5 345 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 SLITRK4Q8IW52 837 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 PUSL1Q8N0Z8 303 aaKnown RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 YIPF4Q9BSR8 244 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 TEX101Q9BY14 249 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 CLDND1Q9NY35 253 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 ZNF282Q9UDV7 671 aaPredicted RBP12.97□□□□□ -0.33
LIG1-203ENST00000536218 DTX4Q9Y2E6 619 aa12.97□□□□□ -0.33
LIG1-203ENST00000536218 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 RNASET2O00584 256 aaKnown RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 SOX30O94993 753 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 PPP3CBP16298 524 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 XCR1P46094 333 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 SEC61A1P61619 476 aaKnown RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 ESPNLQ6ZVH7 1005 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 PRSS45Q7RTY3 260 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 IZUMO1Q8IYV9 350 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 AMER3Q8N944 861 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 TMEM185AQ8NFB2 350 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 GLYATL2Q8WU03 294 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 GEMIN6Q8WXD5 167 aaKnown RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 SMPDL3AQ92484 453 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 EXOSC8Q96B26 276 aaKnown RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 ELSPBP1Q96BH3 223 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 FBXO17Q96EF6 278 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 CDCA3Q99618 268 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 AKR7A3O95154 331 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 KLF8O95600 359 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 LY86O95711 162 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 TBX6O95947 436 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 IFNW1P05000 195 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 HOXB2P14652 356 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 COL9A1P20849 921 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 CCR8P51685 355 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 OR10A3P58181 314 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 RPS21P63220 83 aaKnown RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 GUCA2BQ16661 112 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 TMEM17Q86X19 198 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 LNX2Q8N448 690 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 OR5M9Q8NGP3 310 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 OR14A16Q8NHC5 309 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 THAP6Q8TBB0 222 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 ZNF582Q96NG8 517 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 SPSB2Q99619 263 aa12.96□□□□□ -0.33
LIG1-203ENST00000536218 BHLHE41Q9C0J9 482 aaPredicted RBP12.96□□□□□ -0.33
LIG1-203ENST00000536218 PMS2P1A4D2B8 440 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 H0Y8X5 98 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 ARPC1BO15143 372 aaKnown RBP12.95□□□□□ -0.34
LIG1-203ENST00000536218 GPR37L1O60883 481 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 CEACAM5P06731 702 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 SMIM6P0DI80 62 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 OR12D1P0DN82 309 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 NTSR1P30989 418 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 RORAP35398 523 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 ATP6V1E1P36543 226 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 RAD52P43351 418 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 PPP2CBP62714 309 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 PPP2CAP67775 309 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 HSPB3Q12988 150 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 SNTB1Q13884 538 aaKnown RBP12.95□□□□□ -0.34
LIG1-203ENST00000536218 GINS1Q14691 196 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 SEC23BQ15437 767 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 CCDC157Q569K6 752 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 KHDRBS2Q5VWX1 349 aaKnown RBP12.95□□□□□ -0.34
LIG1-203ENST00000536218 OAFQ86UD1 273 aa12.95□□□□□ -0.34
LIG1-203ENST00000536218 MEX3DQ86XN8 651 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms