RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SMIM14Q96QK8 99 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 NICN1Q9BSH3 213 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 RNF126Q9BV68 326 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 RAB18Q9NP72 206 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 SMPD3Q9NY59 655 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 DCDC2Q9UHG0 476 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 PHF11Q9UIL8 331 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 PTBP2Q9UKA9 531 aaKnown RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 ABCG2Q9UNQ0 655 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLCO1B1Q9Y6L6 691 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 PTCH1Q13635 1447 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 PNPLA6Q8IY17 1366 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 K7N7A8 449 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 HDAC3O15379 428 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 CXCL13O43927 109 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR10H3O60404 316 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 SNNO75324 88 aaPredicted RBP2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 SCGNO76038 276 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 AQP1P29972 269 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 BTDP43251 543 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 DAP3P51398 398 aaKnown RBP2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 STX17P56962 302 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 RIPK4P57078 832 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF45Q02386 682 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 CCDC173Q0VFZ6 552 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 PDK3Q15120 406 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 RGS9BPQ6ZS82 235 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 VSTM4Q8IW00 320 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 C11orf53Q8IXP5 236 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 PRR22Q8IZ63 422 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR4D9Q8NGE8 314 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF564Q8TBZ8 553 aaPredicted RBP2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 MAIP1Q8WWC4 291 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 PIGCQ92535 297 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 MARC2Q969Z3 335 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 EFHD2Q96C19 240 aaPredicted RBP2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 C16orf74Q96GX8 76 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF670Q9BS34 389 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 NT5C3AQ9H0P0 336 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 VCX2Q9H322 139 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 APMAPQ9HDC9 416 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 UFSP2Q9NUQ7 469 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 IL17CQ9P0M4 197 aa2.91□□□□□ -1.94
HMGB1P28-201ENST00000507778 VSTM2BA6NLU5 285 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 KLLNB2CW77 178 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF264O43296 627 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 CCDC130P13994 396 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ANXA13P27216 316 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 LEPP41159 167 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ACTR1AP61163 376 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 LYZP61626 148 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 NDPQ00604 133 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 EGFEM1PQ0D2K5 195 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 C1orf61Q13536 156 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ARL6IP1Q15041 203 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 EXOC3L2Q2M3D2 409 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 CASC1Q6TDU7 716 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ACOT7LQ6ZUV0 252 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 NLRP9Q7RTR0 991 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 SLC35F2Q8IXU6 374 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF100Q8IYN0 542 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 BBS1Q8NFJ9 593 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR56B4Q8NH76 319 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 RAPGEF5Q92565 580 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 RBM14Q96PK6 669 aaKnown RBP2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 CCT7Q99832 543 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 LRRN3Q9H3W5 708 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 MARCH5Q9NX47 278 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 CD274Q9NZQ7 290 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 EXTL2Q9UBQ6 330 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 MEMO1Q9Y316 297 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 ATAD2BQ9ULI0 1458 aa2.9□□□□□ -1.95
HMGB1P28-201ENST00000507778 TRAV26-1A0A087WT03 109 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 A0A1B0GUS0 222 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 CLRN2A0PK11 232 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 TRDCB7Z8K6 153 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 F5H6K3 240 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 LGALS2P05162 132 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 KRTAP1-4P0C5Y4 121 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 GCAP28676 217 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 GRIA1P42261 906 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 KRTAP10-5P60370 271 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 KLRC3Q07444 240 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 FGL1Q08830 312 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 NCBP1Q09161 790 aaKnown RBP2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 IL24Q13007 206 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 CHIT1Q13231 466 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 DPYSL2Q16555 572 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 KRT71Q3SY84 523 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 EOGTQ5NDL2 527 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF544Q6NX49 715 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 PMF1Q6P1K2 205 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 UNQ9370/PRO34162Q6UXP9 181 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 SCARA5Q6ZMJ2 495 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 Q6ZPB1 254 aaPredicted RBP2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 GDPD3Q7L5L3 318 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 TMEM252Q8N6L7 170 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 ALLCQ8N6M5 410 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR2AP1Q8NGE2 309 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 HTR3CQ8WXA8 447 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms