RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 COPZ1P61923 177 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 MRPS15P82914 257 aaKnown RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 IFITM2Q01629 132 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ACSM2AQ08AH3 577 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 PMPCAQ10713 525 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 IKZF1Q13422 519 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 DAG1Q14118 895 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 CEBPEQ15744 281 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ZFP69Q49AA0 526 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ARL13AQ5H913 290 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 SYT6Q5T7P8 510 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 RSBN1Q5VWQ0 802 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ACSM2BQ68CK6 577 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 TIGD3Q6B0B8 471 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 SLC30A6Q6NXT4 461 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 GDF7Q7Z4P5 450 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 P2RY8Q86VZ1 359 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 PLCZ1Q86YW0 608 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ADGRG5Q8IZF4 528 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 LSMEM1Q8N8F7 131 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 NEIL3Q8TAT5 605 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 DYNC2LI1Q8TCX1 351 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ZNF675Q8TD23 568 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 CANT1Q8WVQ1 401 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 IPCEF1Q8WWN9 437 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 C14orf79Q96F83 325 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 TMEM41AQ96HV5 264 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 NODALQ96S42 347 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 RBM4BQ9BQ04 359 aaKnown RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 TTYH2Q9BSA4 534 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 DOHHQ9BU89 302 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 RBM4Q9BWF3 364 aaKnown RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 FUNDC2Q9BWH2 189 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ACPTQ9BZG2 426 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 BRINP2Q9C0B6 783 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 SEMA6AQ9H2E6 1030 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 GSTO2Q9H4Y5 243 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 ZNF703Q9H7S9 590 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 MID1IP1Q9NPA3 183 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 KCNJ16Q9NPI9 418 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 SCN3BQ9NY72 215 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 MRPL39Q9NYK5 338 aaKnown RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 TAS2R7Q9NYW3 318 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 EHD3Q9NZN3 535 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 CCDC59Q9P031 241 aaKnown RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 UTS2RQ9UKP6 389 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 OAZ3Q9UMX2 235 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 DLGAP4Q9Y2H0 992 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 GPR55Q9Y2T6 319 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-207ENST00000507401 PEX16Q9Y5Y5 336 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 PKDREJQ9NTG1 2253 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 CACNA1CQ13936 2221 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 PDZD2O15018 2839 aa7.32□□□□□ -1.24
SCN1A-207ENST00000507401 LOC105371267A0A1B0GV96 52 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 GNG14A0A1W2PPG7 69 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 LRRC3CA6NJW4 275 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 NPIPB8E9PQR5 432 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 C19orf84I3L1E1 186 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 UBFD1O14562 309 aaKnown RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 PCDH7O60245 1069 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 PLOD3O60568 738 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 TOXO94900 526 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 SLITRK5O94991 958 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CBX7O95931 251 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CELA3AP09093 270 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ANXA4P09525 319 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 RFPL3SP0C7P2 107 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 GLI4P10075 376 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 UROSP10746 265 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 PRKCAP17252 672 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ITGA2P17301 1181 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CTRB1P17538 263 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 IGFBP2P18065 325 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CAPN3P20807 821 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 PRKACBP22694 351 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ERP29P30040 261 aaKnown RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 TIA1P31483 386 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ZFP36L2P47974 494 aaKnown RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ALDH9A1P49189 494 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 EMDP50402 254 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 SLC7A2P52569 658 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 NAGLUP54802 743 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 RAB25P57735 213 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 FBXW4P57775 412 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 RAC1P63000 192 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 RAE1P78406 368 aaKnown RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 BAMBIQ13145 260 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CTF1Q16619 201 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 TRMT12Q53H54 448 aaKnown RBP7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ZNF628Q5EBL2 1059 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 C6orf141Q5SZD1 244 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 PRAMEF20Q5VT98 475 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CTRB2Q6GPI1 263 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 RTL6Q6ICC9 239 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 ZNF585AQ6P3V2 769 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 FAM111BQ6SJ93 734 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 SLC16A12Q6ZSM3 486 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 EPHX4Q8IUS5 362 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 LIX1Q8N485 282 aa7.31□□□□□ -1.24
SCN1A-207ENST00000507401 CCNYL1Q8N7R7 359 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms