RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HPGDP15428 266 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 PRKCAP17252 672 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 NTSP30990 170 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 NTF4P34130 210 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 GSTM5P46439 218 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 PRKAA2P54646 552 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 SLC25A3Q00325 362 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 BTKQ06187 659 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 ZNF763Q0D2J5 394 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 PCLAFQ15004 111 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 ZNF551Q7Z340 670 aaPredicted RBP14.39□□□□□ -0.11
VIM-208ENST00000497849 UBE2J2Q8N2K1 259 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 CCNYL1Q8N7R7 359 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 CDRT4Q8N9R6 151 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 SLC16A11Q8NCK7 471 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 OR6Y1Q8NGX8 325 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 MGARPQ8TDB4 240 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 HPS1Q92902 700 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 GIMAP5Q96F15 307 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 MRGPRX4Q96LA9 322 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 TMEM237Q96Q45 408 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 METTL17Q9H7H0 456 aaPredicted RBP14.39□□□□□ -0.11
VIM-208ENST00000497849 MIEF1Q9NQG6 463 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 ACTL7BQ9Y614 415 aa14.39□□□□□ -0.11
VIM-208ENST00000497849 GPC6Q9Y625 555 aaPredicted RBP14.39□□□□□ -0.11
VIM-208ENST00000497849 TMEM120BA0PK00 339 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 H6PDO95479 791 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 STAMBPO95630 424 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 NUDT14O95848 222 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 ITGA5P08648 1049 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 IMPDH1P20839 514 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 GIFP27352 417 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 APEX1P27695 318 aaKnown RBP14.38□□□□□ -0.11
VIM-208ENST00000497849 SLC7A1P30825 629 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 ETV4P43268 484 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 RNF144AP50876 292 aaPredicted RBP14.38□□□□□ -0.11
VIM-208ENST00000497849 CHN2P52757 468 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 CDH15P55291 814 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 DEFA6Q01524 100 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 CLCQ05315 142 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 SELENBP1Q13228 472 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 MLC1Q15049 377 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 DUSP5Q16690 384 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 VPS26BQ4G0F5 336 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 ZNF678Q5SXM1 525 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 CCNJQ5T5M9 372 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 FAM76AQ8TAV0 307 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 PHOSPHO1Q8TCT1 267 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 GPR119Q8TDV5 335 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 FAM216AQ8WUB2 273 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 VRK1Q99986 396 aaPredicted RBP14.38□□□□□ -0.11
VIM-208ENST00000497849 PAIP2Q9BPZ3 127 aaKnown RBP14.38□□□□□ -0.11
VIM-208ENST00000497849 SSU72Q9NP77 194 aaKnown RBP14.38□□□□□ -0.11
VIM-208ENST00000497849 TAS2R16Q9NYV7 291 aa14.38□□□□□ -0.11
VIM-208ENST00000497849 IGKV3D-15A0A087WSY6 115 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 SERINC4A6NH21 518 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 RGS9O75916 674 aaPredicted RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 SUPT7LO94864 414 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 LCN1P31025 176 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 P2RX1P51575 399 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 PRKAG1P54619 331 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 DVL1P1P54792 670 aaPredicted RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 WDR4P57081 412 aaKnown RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 SNRPD2P62316 118 aaKnown RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 LGALS3BPQ08380 585 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 HSPB3Q12988 150 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 OR7E24Q6IFN5 339 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 METTL6Q8TCB7 284 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 APH1AQ96BI3 265 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 OTUB1Q96FW1 271 aaPredicted RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 GATA5Q9BWX5 397 aaPredicted RBP14.37□□□□□ -0.11
VIM-208ENST00000497849 OXSMQ9NWU1 459 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 ASB6Q9NWX5 421 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 MALT1Q9UDY8 824 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 MOKQ9UQ07 419 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 CARD8Q9Y2G2 431 aa14.37□□□□□ -0.11
VIM-208ENST00000497849 A0A0G2JK05 382 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 ZNF716A6NP11 495 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 PDLIM1O00151 329 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 POLR3GO15318 223 aaPredicted RBP14.36□□□□□ -0.11
VIM-208ENST00000497849 BPGMP07738 259 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SERPINB4P48594 390 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SUMO3P55854 103 aaPredicted RBP14.36□□□□□ -0.11
VIM-208ENST00000497849 NDUFAF6Q330K2 333 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SLC25A53Q5H9E4 307 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 EXOSC6Q5RKV6 272 aaKnown RBP14.36□□□□□ -0.11
VIM-208ENST00000497849 ABLIM2Q6H8Q1 611 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 ZCCHC23Q6ZST2 131 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SLC46A3Q7Z3Q1 461 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SLC22A9Q8IVM8 553 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 ARFGAP2Q8N6H7 521 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 C16orf58Q96GQ5 468 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 SNX18Q96RF0 628 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 ZNF382Q96SR6 550 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 GSTO2Q9H4Y5 243 aa14.36□□□□□ -0.11
VIM-208ENST00000497849 ETV2O00321 342 aaPredicted RBP14.35□□□□□ -0.11
VIM-208ENST00000497849 TMPRSS2O15393 492 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 TRIM13O60858 407 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 HMOX2P30519 316 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 SERPINF1P36955 418 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms