RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 YEATS4O95619 227 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TMEM50AO95807 157 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 NUDT14O95848 222 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 CLPTM1O96005 669 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 PAK4O96013 591 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TRBC1P01850 177 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 MMP1P03956 469 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 ANXA5P08758 320 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RNH1P13489 461 aaKnown RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 HSD17B1P14061 328 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 PAX1P15863 534 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 STOMP27105 288 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 POU3F4P49335 361 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 IRF8Q02556 426 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF85Q03923 595 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RAB40BQ12829 278 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TRDNQ13061 729 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 FASTKQ14296 549 aaKnown RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 CD226Q15762 336 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 KIAA1644Q3SXP7 199 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TMEM52BQ4KMG9 183 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 PDPK2PQ6A1A2 396 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 FAHD2BQ6P2I3 314 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 CEACAM19Q7Z692 300 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 SCD5Q86SK9 330 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 COMTD1Q86VU5 262 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 IFNEQ86WN2 208 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 MMAAQ8IVH4 418 aaKnown RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 FAM9CQ8IZT9 166 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 BPIFB2Q8N4F0 458 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RFLNBQ8N5W9 214 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 SAMD12Q8N8I0 201 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TMEM104Q8NE00 496 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 KLHDC9Q8NEP7 349 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 PROKR2Q8NFJ6 384 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 OR52B6Q8NGF0 335 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RFESDQ8TAC1 157 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 ARNTL2Q8WYA1 636 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 OR1E3Q8WZA6 343 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RAB1CQ92928 201 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 UBE2E3Q969T4 207 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 FAHD2AQ96GK7 314 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 NSMCE3Q96MG7 304 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 FAM173AQ9BQD7 235 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 CABLES2Q9BTV7 478 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 DGCR6LQ9BY27 220 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 NHEJ1Q9H9Q4 299 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 WDR41Q9HAD4 459 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 MRPS30Q9NP92 439 aaKnown RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 TREM1Q9NP99 234 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 INPP5EQ9NRR6 644 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 CUTCQ9NTM9 273 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 UBAP1Q9NZ09 502 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 PPP1R3CQ9UQK1 317 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 RASD1Q9Y272 281 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 NOSIPQ9Y314 301 aaKnown RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 V9GYY5 206 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-207ENST00000476169 SAMD9Q5K651 1589 aa3.54□□□□□ -1.84
VPS13D-207ENST00000476169 SALL1Q9NSC2 1324 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 TRBV7-9A0A0J9YWB2 115 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 A0A1B0GUV1 79 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 A0A1W2PPE3 182 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 OR6C74A6NCV1 312 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 RNF212BA8MTL3 300 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 AIM2O14862 343 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 POLR1CO15160 346 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 PRKAB2O43741 272 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 KHDRBS3O75525 346 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 KRT36O76013 467 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 FCGR3AP08637 254 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SDC1P18827 310 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 POLR2EP19388 210 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 IFNA8P32881 189 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SLC1A2P43004 574 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 QARSP47897 775 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 CRYBA2P53672 197 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 HSPA2P54652 639 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SLC8A3P57103 927 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 ERVFC1-1P60608 527 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 RIPPLY1Q0D2K3 151 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 ARL16Q0P5N6 197 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 VGLL4Q14135 290 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 LAGE3Q14657 143 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 MLF2Q15773 248 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 NDUFA9Q16795 377 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 PPP1R3AQ16821 1122 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 TEX44Q53QW1 395 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 BEX5Q5H9J7 111 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 ACER2Q5QJU3 275 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 C6orf183Q5T699 404 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SEL1L2Q5TEA6 688 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 C9orf135Q5VTT2 229 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 WSCD1Q658N2 575 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SLC25A25Q6KCM7 469 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 C19orf48Q6RUI8 117 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF771Q7L3S4 317 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SLC26A9Q7LBE3 791 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 NIPA1Q7RTP0 329 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 PRSS48Q7RTY5 328 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 FAM58AQ8N1B3 248 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms