RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 MTORP42345 2549 aa14.79□□□□□ -0.04
USP40-212ENST00000473191 TRIM64A6NGJ6 449 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 TRIM64BA6NI03 449 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 CYTIPO60759 359 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 PGRP06401 933 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 PABPC4LP0CB38 370 aaKnown RBP14.78□□□□□ -0.04
USP40-212ENST00000473191 FOSL1P15407 271 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 CCNA2P20248 432 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 KHKP50053 298 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 CLNS1AP54105 237 aaKnown RBP14.78□□□□□ -0.04
USP40-212ENST00000473191 MAGOHP61326 146 aaKnown RBP14.78□□□□□ -0.04
USP40-212ENST00000473191 KCNJ10P78508 379 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 RASGEF1BQ0VAM2 473 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 GTDC1Q4AE62 458 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 SYT14P1Q58G82 188 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 ATAD3BQ5T9A4 648 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 SHEQ5VZ18 495 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 DNAJC14Q6Y2X3 702 aaPredicted RBP14.78□□□□□ -0.04
USP40-212ENST00000473191 ZNF621Q6ZSS3 439 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 ADGRG3Q86Y34 549 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 P3H2Q8IVL5 708 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 LRRC34Q8IZ02 419 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 VPS37AQ8NEZ2 397 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 ST8SIA1Q92185 356 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 PIGTQ969N2 578 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 OR52E6Q96RD3 313 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 TMEM204Q9BSN7 226 aa14.78□□□□□ -0.04
USP40-212ENST00000473191 HDAC3O15379 428 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 LYZL6O75951 148 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 SNUPNO95149 360 aaKnown RBP14.77□□□□□ -0.05
USP40-212ENST00000473191 INHBBP09529 407 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 PPP3CBP16298 524 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 PGCP20142 388 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 FPR1P21462 350 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 MVDP53602 400 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 DPY19L1Q2PZI1 675 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 AP1ARQ63HQ0 302 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 TMPPEQ6ZT21 453 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 YTHDF3Q7Z739 585 aaKnown RBP14.77□□□□□ -0.05
USP40-212ENST00000473191 LRRC75A-AS1Q8N1F1 130 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 OR9I1Q8NGQ6 314 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 ZNF563Q8TA94 476 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 AKAP1Q92667 903 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP40-212ENST00000473191 OR52B2Q96RD2 323 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 THAP1Q9NVV9 213 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 KLHL9Q9P2J3 617 aa14.77□□□□□ -0.05
USP40-212ENST00000473191 FLNAP21333 2647 aaKnown RBP14.77□□□□□ -0.05
USP40-212ENST00000473191 H7C1Q1 480 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 IGHV3-9P01782 118 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 GUSBP08236 651 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 TFPIP10646 304 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 IGHV1-2P23083 117 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 OR3A2P47893 321 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 IDH2P48735 452 aaKnown RBP14.76□□□□□ -0.05
USP40-212ENST00000473191 PTH2RP49190 550 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 NXNQ6DKJ4 435 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 C20orf204Q6ZNR8 217 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 SPATA19Q7Z5L4 167 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 CCDC103Q8IW40 242 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 SLC43A2Q8N370 569 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 TMEM234Q8WY98 164 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 TLCD1Q96CP7 247 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 MAELQ96JY0 434 aaKnown RBP14.76□□□□□ -0.05
USP40-212ENST00000473191 OR10A4Q9H209 315 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 TMBIM4Q9HC24 238 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 GP6Q9HCN6 339 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 POLE3Q9NRF9 147 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 SLC35A3Q9Y2D2 325 aa14.76□□□□□ -0.05
USP40-212ENST00000473191 TMEM72A0PK05 275 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ZNF716A6NP11 495 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 SULT2B1O00204 365 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 HS3ST1O14792 307 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 SMAD7O15105 426 aaKnown RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 AGR2O95994 175 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 RPS4Y1P22090 263 aaKnown RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 IL32P24001 234 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ADSLP30566 484 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 FOXG1P55316 489 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 LTBQ06643 244 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ITGADQ13349 1161 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 BEND6Q5SZJ8 279 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 NCMAPQ5T1S8 102 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ABLIM2Q6H8Q1 611 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 STEAP2Q8NFT2 490 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 KISS1RQ969F8 398 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 VPS33AQ96AX1 596 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 AURKBQ96GD4 344 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 MANSC1Q9H8J5 431 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 SERINC1Q9NRX5 453 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.75□□□□□ -0.05
USP40-212ENST00000473191 RLIMQ9NVW2 624 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 CHRNA9Q9UGM1 479 aa14.75□□□□□ -0.05
USP40-212ENST00000473191 ZC3H12DA2A288 527 aaKnown RBP14.74□□□□□ -0.05
USP40-212ENST00000473191 DPRXA6NFQ7 191 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 AGAP5A6NIR3 686 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 CLOCKO15516 846 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 LY6G6DO95868 133 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 IMPDH2P12268 514 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 ETFAP13804 333 aa14.74□□□□□ -0.05
USP40-212ENST00000473191 APOBEC1P41238 236 aaKnown RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms