RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SERTAD2Q14140 314 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 KIRREL2Q6UWL6 708 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SPATC1Q76KD6 591 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 UBQLNLQ8IYU4 475 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 TDHQ8IZJ6 230 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 BCORP1Q8N888 145 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 ACOT12Q8WYK0 555 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 EFHD2Q96C19 240 aaPredicted RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 MMABQ96EY8 250 aaPredicted RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 PPP1R3EQ9H7J1 279 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 COMMD3Q9UBI1 195 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 ERVK-19Q9WJR5 959 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SIRT4Q9Y6E7 314 aaPredicted RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 A0A087WUJ7 227 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 HTR3EA5X5Y0 456 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SERINC4A6NH21 518 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 CD8B2A6NJW9 211 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 PPM1BO75688 479 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 CD8BP10966 210 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 NOS3P29474 1203 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 MLLT3P42568 568 aaPredicted RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 FNTBP49356 437 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 EVX1P49640 407 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 OR2B6P58173 313 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SRSF5Q13243 272 aaKnown RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 ERV3-1Q14264 604 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 ZNF440Q8IYI8 595 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 LMX1AQ8TE12 382 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 ARSGQ96EG1 525 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SLC22A4Q9H015 551 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 RAB33BQ9H082 229 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 PCED1AQ9H1Q7 454 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 LMAN1LQ9HAT1 526 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 MKKSQ9NPJ1 570 aaPredicted RBP13.86□□□□□ -0.19
LDLR-202ENST00000455727 PRODH2Q9UF12 536 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 EPHA6Q9UF33 1036 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 CHRNA9Q9UGM1 479 aa13.86□□□□□ -0.19
LDLR-202ENST00000455727 SMIM30A4D0T7 59 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 TLCD2A6NGC4 264 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 NDUFB2O95178 105 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 CSTAP01040 98 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 MAOAP21397 527 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 INSL4Q14641 139 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 PYDC2Q56P42 97 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ZNF544Q6NX49 715 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 CADM2Q8N3J6 435 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 OR7G1Q8NGA0 311 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 OR51Q1Q8NH59 317 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 CCNL2Q96S94 520 aaPredicted RBP13.85□□□□□ -0.19
LDLR-202ENST00000455727 TBX5Q99593 518 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 TPSD1Q9BZJ3 242 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 RNF32Q9H0A6 362 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 PDE7BQ9NP56 450 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 LRIT1Q9P2V4 623 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 KLHL21Q9UJP4 597 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 OR10H1Q9Y4A9 318 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 HEATR5AQ86XA9 2040 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 C2orf92A0A1B0GVN3 265 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 MBTPS2O43462 519 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 HLA-DQB1P01920 261 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ADH7P40394 386 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 HTR3AP46098 478 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 SLC16A1P53985 500 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ZNF85Q03923 595 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.85□□□□□ -0.195e-6■□□□□ 10.9
LDLR-202ENST00000455727 KLHL26Q53HC5 615 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 FCRLBQ6BAA4 426 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 MED25Q71SY5 747 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 RAB43Q86YS6 212 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 SDR16C5Q8N3Y7 309 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 OR4C3Q8NH37 302 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 SMPDL3BQ92485 455 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 SGTBQ96EQ0 304 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 NEDD4LQ96PU5 975 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 SLC19A3Q9BZV2 496 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ERVMER34-1Q9H9K5 563 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 ADAM30Q9UKF2 790 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 NOX1Q9Y5S8 564 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 GON4LQ3T8J9 2241 aa13.85□□□□□ -0.19
LDLR-202ENST00000455727 HPGDSO60760 199 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 SLC19A2O60779 497 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CLPSP04118 112 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 PGDP52209 483 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 RACK1P63244 317 aaKnown RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 SMAD4Q13485 552 aaKnown RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 TDGQ13569 410 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CARTPTQ16568 116 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CNIH2Q6PI25 160 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 OGFOD3Q6PK18 319 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 ZNF517Q6ZMY9 492 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 VASH1Q7L8A9 365 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 LSRQ86X29 649 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 CADM4Q8NFZ8 388 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 OR5M3Q8NGP4 307 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 ERMAPQ96PL5 475 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 PHF7Q9BWX1 381 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 HOXD1Q9GZZ0 328 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 ENAMQ9NRM1 1142 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 ZMIZ1Q9ULJ6 1067 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 IGHV5-51A0A0C4DH38 117 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms