RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 RAB41Q5JT25 222 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 KIAA1211LQ6NV74 962 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 IL20RBQ6UXL0 311 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 RNF113BQ8IZP6 322 aaKnown RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ZBTB2Q8N680 514 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 OR1J1Q8NGS3 322 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 HPSE2Q8WWQ2 592 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 PACRGQ96M98 296 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 CLCC1Q96S66 551 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 EPYCQ99645 322 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 GSTO2Q9H4Y5 243 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 GLRX2Q9NS18 164 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 NDUFB11Q9NX14 153 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 PUS1Q9Y606 427 aaKnown RBP eCLIP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 MAGEB17A8MXT2 336 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 SMAD6O43541 496 aaKnown RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 MAFKO60675 156 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 UBL3O95164 117 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 PLGP00747 810 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 GTF2F2P13984 249 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 MYOGP15173 224 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 CXCL2P19875 107 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 CHATP28329 748 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 THBS4P35443 961 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ARF3P61204 181 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ARF1P84077 181 aaKnown RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 MAP4K2Q12851 820 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 CPTPQ5TA50 214 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 IL34Q6ZMJ4 242 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 TMPRSS11FQ6ZWK6 438 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ABI3BPQ7Z7G0 1075 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 PLPP5Q8NEB5 264 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 UBE2E3Q969T4 207 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 MTIF3Q9H2K0 278 aaKnown RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 C2orf42Q9NWW7 574 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 RREB1Q92766 1687 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 PRODHO43272 600 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 TBL1XO60907 577 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 IL3P08700 152 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ZNF44P15621 663 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 RPIAP49247 311 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 STC1P52823 247 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 CLN3Q13286 438 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ZNF585AQ6P3V2 769 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 ZNF467Q7Z7K2 595 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-202ENST00000378161 OR6X1Q8NH79 312 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 SYT4Q9H2B2 425 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 HHATLQ9HCP6 504 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 STARD10Q9Y365 291 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 HS3ST4Q9Y661 456 aa11.02□□□□□ -0.65
NPHP4-202ENST00000378161 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 GTPBP1O00178 669 aaKnown RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 PPP6CO00743 305 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 FLRT2O43155 660 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 SCN2BO60939 215 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 TRBC1P01850 177 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 NME2P22392 152 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 TUBG1P23258 451 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 EPHA2P29317 976 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 GABRA5P31644 462 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 OR3A1P47881 315 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ACTBP60709 375 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ACTG1P63261 375 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 PJVKQ0ZLH3 352 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 HABP2Q14520 560 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 IQCJQ1A5X6 159 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 RHEBL1Q8TAI7 183 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 SMARCD2Q92925 531 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 R3HDM4Q96D70 268 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 DTD2Q96FN9 168 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 CYP2S1Q96SQ9 504 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 GABARAPL1Q9H0R8 117 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 TXNRD2Q9NNW7 524 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 NTMQ9P121 344 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 HIF3AQ9Y2N7 669 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 MANSC4A6NHS7 340 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 FFAR2O15552 330 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 DNAJB6O75190 326 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ARL6IP5O75915 188 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ABLIM3O94929 683 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 CYB5R3P00387 301 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 SFTA3P0C7M3 94 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 PCBP4P57723 403 aaKnown RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 SMAD3P84022 425 aaKnown RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 LMAN2Q12907 356 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ARHGAP19Q14CB8 494 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 VAMP3Q15836 100 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 MOGAT2Q3SYC2 334 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 DBX2Q6ZNG2 339 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 C11orf42Q8N5U0 333 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 OR2AP1Q8NGE2 309 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 OR13C2Q8NGS9 318 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 ISOC2Q96AB3 205 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 TECTBQ96PL2 329 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 GPR34Q9UPC5 381 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 TCRBV21S2A2A0A5A6 115 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 PLRG1O43660 514 aaKnown RBP11.01□□□□□ -0.65
NPHP4-202ENST00000378161 KDELR3O43731 214 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 SEMA7AO75326 666 aa11.01□□□□□ -0.65
NPHP4-202ENST00000378161 NAA10P41227 235 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms