RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RCE1Q9Y256 329 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 MUC22E2RYF6 1773 aaPredicted RBP15.15■□□□□ 0.02
SDC4-201ENST00000372733 LTBP2Q14767 1821 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 PRICKLE3O43900 615 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 ZNF888P0CJ79 500 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 EPCAMP16422 314 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 VEGFCP49767 419 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 SIM1P81133 766 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 DUSP8Q13202 625 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 HSD17B12Q53GQ0 312 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 CDH24Q86UP0 819 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 ZMYND19Q96E35 227 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 OR14A2Q96R54 314 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 ABRACLQ9P1F3 81 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 RPS6KB2Q9UBS0 482 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 CAMK2AQ9UQM7 478 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 PRELID1Q9Y255 219 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 A0A0C4DFX4 3053 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TBC1D3KA0A087X1G2 549 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TBC1D3BA6NDS4 549 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TBC1D3FA6NER0 549 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 RNGTTO60942 597 aaKnown RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 PEX14O75381 377 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TFP02787 698 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 CSF2RAP15509 400 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 UGT2B7P16662 529 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 LCN1P31025 176 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 BLVRAP53004 296 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 RAG2P55895 527 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 IRF4Q15306 451 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TCEA2Q15560 299 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 SLC22A10Q63ZE4 541 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TBC1D3GQ6DHY5 549 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 LINGO2Q7L985 606 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 CMIPQ8IY22 773 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 HDDC3Q8N4P3 179 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 MS4A15Q8N5U1 240 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 GALNT11Q8NCW6 608 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 OR11G2Q8NGC1 345 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 OR51L1Q8NGJ5 315 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 ZCCHC10Q8TBK6 192 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 ADAP2Q9NPF8 381 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 MEPEQ9NQ76 525 aaPredicted RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 LYARQ9NX58 379 aaKnown RBP15.14■□□□□ 0.01
SDC4-201ENST00000372733 DEC1Q9P2X7 70 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 CHD7Q9P2D1 2997 aa15.14■□□□□ 0.01
SDC4-201ENST00000372733 TRAV1-2A0A0B4J238 106 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 C1QTNF3-AMACRE9PGA6 284 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 M0R233 179 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 CDK2AP1O14519 115 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 DNAJB6O75190 326 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 RRASP10301 218 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 ZNF3P17036 446 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 NT5EP21589 574 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 BMP8BP34820 402 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 NAA10P41227 235 aaPredicted RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 TSPAN5P62079 268 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 GAB4Q2WGN9 574 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 BMP8AQ7Z5Y6 402 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 CMTM4Q8IZR5 234 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SHISA5Q8N114 240 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TEX19Q8NA77 164 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 MFSD9Q8NBP5 474 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SRFBP1Q8NEF9 429 aaKnown RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 OR4C6Q8NH72 309 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 PELI1Q96FA3 418 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 C7orf50Q9BRJ6 194 aaKnown RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 C1QTNF6Q9BXI9 259 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 OR10A4Q9H209 315 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TMEM74BQ9NUR3 256 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 NPTNQ9Y639 398 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 THBS1P07996 1170 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 LAMP2P13473 410 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 CDK5R1Q15078 307 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TRMT12Q53H54 448 aaKnown RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 VN1R4Q7Z5H5 301 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 OR2L13Q8N349 312 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 HMGB4Q8WW32 186 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SUSD6Q92537 303 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TEX101Q9BY14 249 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 ZNF350Q9GZX5 532 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 GSTZ1O43708 216 aaPredicted RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 ITGB8P26012 769 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 DRD3P35462 400 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 RAB14P61106 215 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TNFRSF17Q02223 184 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 PLAURQ03405 335 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 DYRK1AQ13627 763 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 AMZ1Q400G9 498 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 DCST2Q5T1A1 773 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 TMPRSS11FQ6ZWK6 438 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 RNF113BQ8IZP6 322 aaKnown RBP15.13■□□□□ 0.01
SDC4-201ENST00000372733 ZNF619Q8N2I2 560 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SMIM19Q96E16 107 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 PDCD1LG2Q9BQ51 273 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SEC22CQ9BRL7 303 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 RAB11FIP5Q9BXF6 653 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 HDAC8Q9BY41 377 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 SPATA2Q9UM82 520 aa15.13■□□□□ 0.01
SDC4-201ENST00000372733 MED31Q9Y3C7 131 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms