RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MFSD14CQ5VZR4 134 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SLC27A4Q6P1M0 643 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PDZD3Q86UT5 571 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 FTMTQ8N4E7 242 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NETO2Q8NC67 525 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR52B6Q8NGF0 335 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PHOSPHO2Q8TCD6 241 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NKD2Q969F2 451 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ZBTB8AQ96BR9 441 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GGACTQ9BVM4 153 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 RAB1BQ9H0U4 201 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 HEYLQ9NQ87 328 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 FAM96BQ9Y3D0 163 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CSPG4Q6UVK1 2322 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ANXA2P2A6NMY6 339 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 PRKAB2O43741 272 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 RFPL3O75679 317 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 TOXO94900 526 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 PMP2P02689 132 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NR3C1P04150 777 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ARR3P36575 388 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 TM4SF4P48230 202 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 BLKP51451 505 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 TAS2R43P59537 309 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 RAP2BP61225 183 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 FMO1Q01740 532 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF181Q2M3W8 571 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ITPRIPL2Q3MIP1 535 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 SEPT12Q8IYM1 358 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR2G2Q8NGZ5 317 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ASB17Q8WXJ9 295 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 SCUBE2Q9NQ36 999 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 C9orf84Q5VXU9 1444 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NID2Q14112 1375 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD30BQ9BXX2 1392 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 TRBV11-1A0A0K0K1C0 115 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 MROH6A6NGR9 719 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 MMP20O60882 483 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 RAP1AP62834 184 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CAPSQ13938 189 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 EMC4Q5J8M3 183 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 REP15Q6BDI9 236 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 YIPF7Q8N8F6 280 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 RBM15BQ8NDT2 890 aaKnown RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR51S1Q8NGJ8 323 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR10J5Q8NHC4 309 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF461Q8TAF7 563 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CD101Q93033 1021 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 SPSB1Q96BD6 273 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 PHYHIPLQ96FC7 376 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ARL6Q9H0F7 186 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 KLRF1Q9NZS2 232 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NPIPB13A6NJU9 1138 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NPIPB4C9JG80 1138 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 FFAR3O14843 346 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CAPN5O15484 640 aaPredicted RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 GPR42O15529 346 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NDUFA2O43678 99 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 IFNA1P01562 189 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CST2P09228 141 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 METTL15P1P0C7V9 234 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ITPKBP27987 946 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 GUCA1AP43080 201 aaPredicted RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 C9orf64Q5T6V5 341 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZBTB37Q5TC79 503 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 SLC35D2Q76EJ3 337 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CMTM1Q8IZ96 169 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR10G3Q8NGC4 313 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR6N2Q8NGY6 317 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ISOC2Q96AB3 205 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CABLES2Q9BTV7 478 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 FKBPLQ9UIM3 349 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ALG6Q9Y672 507 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF814B7Z6K7 855 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 TPST2O60704 377 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 GLUD1P00367 558 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 UBA52P62987 128 aaKnown RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 HES1Q14469 280 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OVCH1Q7RTY7 1134 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 CSNK1A1LQ8N752 337 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZFP41Q8N8Y5 198 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 OR6X1Q8NH79 312 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 SPPL2AQ8TCT8 520 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 C2orf88Q9BSF0 95 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ADAT1Q9BUB4 502 aaKnown RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 GPR174Q9BXC1 333 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 RNF121Q9H920 327 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF556Q9HAH1 456 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 MED29Q9NX70 200 aa3.34□□□□□ -1.88
SCN1A-221ENST00000641996 NXT1Q9UKK6 140 aaKnown RBP3.34□□□□□ -1.88
SCN1A-221ENST00000641996 PRSS37A4D1T9 235 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 H3BNH8 94 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 UBFD1O14562 309 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ITGA10O75578 1167 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CXCL14O95715 111 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DUSP1P28562 367 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ELK3P41970 407 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TAS2R50P59544 299 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PTENP60484 403 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PPP1R1AQ13522 171 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms