RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ACTRT1Q8TDG2 376 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 AMDHD1Q96NU7 426 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 GPR78Q96P69 363 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 TREM2Q9NZC2 230 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 SNX6Q9UNH7 406 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 CARD8Q9Y2G2 431 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 A0A1W2PQD3 144 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ZNF716A6NP11 495 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 hCG_2039718K7EN88 272 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 WNT9BO14905 357 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 SEC31AO94979 1220 aaKnown RBP12.59□□□□□ -0.39
CLN3-249ENST00000636685 C2P06681 752 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 IGFBP1P08833 259 aaPredicted RBP12.59□□□□□ -0.39
CLN3-249ENST00000636685 ACP2P11117 423 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ADRA2CP18825 462 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 DDCP20711 480 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 PRPS1P60891 318 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 IL1RL1Q01638 556 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 C2orf80Q0P641 193 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ADRM1Q16186 407 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 NDUFAF6Q330K2 333 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 CCNJQ5T5M9 372 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ZNF662Q6ZS27 426 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 IKBIPQ70UQ0 350 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 C1QL2Q7Z5L3 287 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 C17orf78Q8N4C9 275 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 GPR119Q8TDV5 335 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 PYROXD1Q8WU10 500 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 C22orf15Q8WYQ4 148 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 HOXB13Q92826 284 aaPredicted RBP12.59□□□□□ -0.39
CLN3-249ENST00000636685 APIPQ96GX9 242 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 DOK1Q99704 481 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 KCNS3Q9BQ31 491 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 TRIM31Q9BZY9 425 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ZNF225Q9UK10 706 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 ICAM5Q9UMF0 924 aa12.59□□□□□ -0.39
CLN3-249ENST00000636685 CCDC189A1A4V9 331 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 SH3PXD2BA1X283 911 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 MANBAO00462 879 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 MRPL33O75394 65 aaKnown RBP12.58□□□□□ -0.4
CLN3-249ENST00000636685 NUDT17P0C025 328 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 GAAP10253 952 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 PRPS2P11908 318 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 NTSP30990 170 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 TIA1P31483 386 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-249ENST00000636685 SLC1A3P43003 542 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 DIO1P49895 249 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 P2RX1P51575 399 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 CDH13P55290 713 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 PDK3Q15120 406 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 OCLNQ16625 522 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 C1orf162Q8NEQ5 155 aaPredicted RBP12.58□□□□□ -0.4
CLN3-249ENST00000636685 OR6Y1Q8NGX8 325 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 CEP70Q8NHQ1 597 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 OTUB1Q96FW1 271 aaPredicted RBP12.58□□□□□ -0.4
CLN3-249ENST00000636685 DUX5Q96PT3 197 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 SHCBP1LQ9BZQ2 653 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 QRSL1Q9H0R6 528 aaKnown RBP12.58□□□□□ -0.4
CLN3-249ENST00000636685 G6PC2Q9NQR9 355 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 DCTN4Q9UJW0 460 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 ACTL7BQ9Y614 415 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 ARHGAP32A7KAX9 2087 aa12.58□□□□□ -0.4
CLN3-249ENST00000636685 TRAV20A0A0B4J274 112 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TMEM129A0AVI4 362 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 OR4F21O95013 312 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 KLHL2O95198 593 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 WNT11O96014 354 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TFP02787 698 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 SAGP10523 405 aaPredicted RBP12.57□□□□□ -0.4
CLN3-249ENST00000636685 GPR6P46095 362 aaPredicted RBP12.57□□□□□ -0.4
CLN3-249ENST00000636685 PRKAG1P54619 331 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 BTKQ06187 659 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 ACSM2AQ08AH3 577 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 DUSP5Q16690 384 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 VPS26BQ4G0F5 336 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 HIKESHIQ53FT3 197 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TECRLQ5HYJ1 363 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 ACSM2BQ68CK6 577 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 KLHL24Q6TFL4 600 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TMPPEQ6ZT21 453 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 ZNF551Q7Z340 670 aaPredicted RBP12.57□□□□□ -0.4
CLN3-249ENST00000636685 MTDHQ86UE4 582 aaKnown RBP12.57□□□□□ -0.4
CLN3-249ENST00000636685 TEX29Q8N6K0 151 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 SLC16A11Q8NCK7 471 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TAF15Q92804 592 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLN3-249ENST00000636685 SLC38A2Q96QD8 506 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TMPRSS13Q9BYE2 586 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 ACPTQ9BZG2 426 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 RACGAP1Q9H0H5 632 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 TPK1Q9H3S4 243 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 DYNLRB1Q9NP97 96 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 SLC7A10Q9NS82 523 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 UPB1Q9UBR1 384 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 FBXO9Q9UK97 447 aaPredicted RBP12.57□□□□□ -0.4
CLN3-249ENST00000636685 GRID1Q9ULK0 1009 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 NFU1Q9UMS0 254 aa12.57□□□□□ -0.4
CLN3-249ENST00000636685 POM121CA8CG34 1229 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 STX16-NPEPL1H3BU86 382 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SULT2B1O00204 365 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 STX16O14662 325 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms