RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SKAP2O75563 359 aaPredicted RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 SNUPNO95149 360 aaKnown RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 PLAUP00749 431 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 FESP07332 822 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 CD3EP07766 207 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 MATN1P21941 496 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 ATP5J2P56134 94 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 PPP2R2BQ00005 443 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 QPRTQ15274 297 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TOMM34Q15785 309 aaPredicted RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 KRT71Q3SY84 523 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TNFAIP8L3Q5GJ75 292 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 Q6ZT83 130 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 KIRREL3Q8IZU9 778 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TMCO5AQ8N6Q1 288 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TMEM234Q8WY98 164 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TRMT61AQ96FX7 289 aaKnown RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 RASSF4Q9H2L5 321 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 SERINC1Q9NRX5 453 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 EXD2Q9NVH0 621 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 ZNF724A8MTY0 619 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 CYTIPO60759 359 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 G6PDP11413 515 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 ENPP1P22413 925 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 ARRB2P32121 409 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 SOAT1P35610 550 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 OR3A2P47893 321 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 TAB1Q15750 504 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 ARHGAP11BQ3KRB8 267 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 PDZK1Q5T2W1 519 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 OR8J2Q8NGG1 315 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 OR5D16Q8NGK9 328 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 OR5AK3PQ8NH89 298 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 MIPOL1Q8TD10 442 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 SLC25A43Q8WUT9 341 aaPredicted RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 POLE3Q9NRF9 147 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 PCDHGB4Q9UN71 923 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 CR1P17927 2039 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 HEATR1Q9H583 2144 aaKnown RBP16.35■□□□□ 0.21
CLN3-241ENST00000635861 OVOL3O00110 214 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 ADAP00813 363 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 PGCP20142 388 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 FKBP2P26885 142 aaKnown RBP16.35■□□□□ 0.21
CLN3-241ENST00000635861 ETV4P43268 484 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 CCR4P51679 360 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 CSNK2A1P68400 391 aaPredicted RBP16.35■□□□□ 0.21
CLN3-241ENST00000635861 SKP2Q13309 424 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 AP1ARQ63HQ0 302 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 C6orf120Q7Z4R8 191 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 LRRC34Q8IZ02 419 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 RFWD2Q8NHY2 731 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 PIWIL2Q8TC59 973 aaKnown RBP16.35■□□□□ 0.21
CLN3-241ENST00000635861 SLC35G5Q96KT7 338 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 ZNF350Q9GZX5 532 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 LAMP3Q9UQV4 416 aa16.35■□□□□ 0.21
CLN3-241ENST00000635861 SPIN1Q9Y657 262 aaPredicted RBP16.35■□□□□ 0.21
CLN3-241ENST00000635861 ZNF814B7Z6K7 855 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 TYROBPO43914 113 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 DANCRP0C864 163 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 RASGEF1BQ0VAM2 473 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 GPR68Q15743 365 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 NDUFAF6Q330K2 333 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 TIGD2Q4W5G0 525 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 HEPHL1Q6MZM0 1159 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 EIF3MQ7L2H7 374 aaKnown RBP16.34■□□□□ 0.21
CLN3-241ENST00000635861 BHLHA15Q7RTS1 189 aaPredicted RBP16.34■□□□□ 0.21
CLN3-241ENST00000635861 P2RY8Q86VZ1 359 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 NUDCD3Q8IVD9 361 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 ARFGAP2Q8N6H7 521 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 ATP6V1C2Q8NEY4 427 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 VPS37AQ8NEZ2 397 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 LILRB1Q8NHL6 650 aaPredicted RBP16.34■□□□□ 0.21
CLN3-241ENST00000635861 RAB3IL1Q8TBN0 382 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 THUMPD3Q9BV44 507 aaKnown RBP16.34■□□□□ 0.21
CLN3-241ENST00000635861 GRIP2Q9C0E4 1043 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 TMBIM4Q9HC24 238 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 ING1Q9UK53 422 aaPredicted RBP16.34■□□□□ 0.21
CLN3-241ENST00000635861 SLC35A3Q9Y2D2 325 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 ABCA1O95477 2261 aa16.34■□□□□ 0.21
CLN3-241ENST00000635861 RNF103-CHMP3A0A140T963 221 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 A0A1W2PNR3 127 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 ANKRD28O15084 1053 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 SMAD9O15198 467 aaKnown RBP16.33■□□□□ 0.2
CLN3-241ENST00000635861 UGT2B17O75795 530 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 CSTAP01040 98 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 MYZAPP0CAP1 466 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 CAPRIN1Q14444 709 aaKnown RBP16.33■□□□□ 0.2
CLN3-241ENST00000635861 PDK3Q15120 406 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 DPY19L1Q2PZI1 675 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 PGS1Q32NB8 556 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 ZNF672Q499Z4 452 aaPredicted RBP16.33■□□□□ 0.2
CLN3-241ENST00000635861 ATAD3BQ5T9A4 648 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 C16orf62Q7Z3J2 963 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 GTPBP3Q969Y2 492 aaKnown RBP16.33■□□□□ 0.2
CLN3-241ENST00000635861 OR5B2Q96R09 309 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 SERHL2Q9H4I8 314 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 ACER3Q9NUN7 267 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 EMC3Q9P0I2 261 aa16.33■□□□□ 0.2
CLN3-241ENST00000635861 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.33■□□□□ 0.2
CLN3-241ENST00000635861 RGS16O15492 202 aaPredicted RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms