RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 AP3D1O14617 1153 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 GCM2O75603 506 aaPredicted RBP18.3■□□□□ 0.52
PTCD3-220ENST00000627371 MFN2O95140 757 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 RNF224P0DH78 156 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 UQCRBP14927 111 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 ME2P23368 584 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 CLDN20P56880 219 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 PSME3P61289 254 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 VEZF1Q14119 521 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 RPTNQ6XPR3 784 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 CCDC80Q76M96 950 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 ZNF550Q7Z398 422 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 PATL1Q86TB9 770 aaKnown RBP18.3■□□□□ 0.52
PTCD3-220ENST00000627371 GGNQ86UU5 652 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 ARMC8Q8IUR7 673 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 UBQLNLQ8IYU4 475 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 OR2T12Q8NG77 320 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 SMPDL3BQ92485 455 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 TUBA1CQ9BQE3 449 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 TTYH2Q9BSA4 534 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 ABCD2Q9UBJ2 740 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 USP22Q9UPT9 525 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 MPDZO75970 2070 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 M0QX08 132 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 NME4O00746 187 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 SEC14L5O43304 696 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 ZG16O60844 167 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 EPPINO95925 133 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 GKN3PP0CG01 181 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 GLI4P10075 376 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 IL11P20809 199 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 ACAA2P42765 397 aaKnown RBP18.29■□□□□ 0.52
PTCD3-220ENST00000627371 IDH2P48735 452 aaKnown RBP18.29■□□□□ 0.52
PTCD3-220ENST00000627371 SUCLG1P53597 346 aaKnown RBP18.29■□□□□ 0.52
PTCD3-220ENST00000627371 CLDN15P56746 228 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 NUP107P57740 925 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 EEFSECP57772 596 aaKnown RBP18.29■□□□□ 0.52
PTCD3-220ENST00000627371 DMTNQ08495 405 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 SELENBP1Q13228 472 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 NSUN5P2Q63ZY6 315 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 PLEKHM3Q6ZWE6 761 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 GRINAQ7Z429 371 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 ADGRE4PQ86SQ3 457 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 LACC1Q8IV20 430 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 PINK1Q9BXM7 581 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 PRDM4Q9UKN5 801 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 COL12A1Q99715 3063 aa18.29■□□□□ 0.52
PTCD3-220ENST00000627371 CD8B2A6NJW9 211 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 H0YC42 278 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 EFNA2O43921 213 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 TPST1O60507 370 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 OPN1SWP03999 348 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 GP1BBP13224 206 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 TPD52P55327 224 aaPredicted RBP18.28■□□□□ 0.52
PTCD3-220ENST00000627371 LIPEQ05469 1076 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 PMPCAQ10713 525 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 MERTKQ12866 999 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 SEM1Q6ZVN7 128 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 COMTD1Q86VU5 262 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 MICU2Q8IYU8 434 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 LILRA2Q8N149 483 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 UCN2Q96RP3 112 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 TRIB1Q96RU8 372 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 ALG2Q9H553 416 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 TMEM185BQ9H7F4 350 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 CALHM2Q9HA72 323 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 SPAG4Q9NPE6 437 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 CACNA1CQ13936 2221 aa18.28■□□□□ 0.52
PTCD3-220ENST00000627371 INTS1Q8N201 2190 aaKnown RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 ELOVL7A1L3X0 281 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 GJE1A6NN92 205 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 CLCA1A8K7I4 914 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 KDM4EB2RXH2 506 aaPredicted RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 FRS3O43559 492 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 APOBEC1P41238 236 aaKnown RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 MNAT1P51948 309 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 SMSP52788 366 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 CRYBA2P53672 197 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 RPS3AP61247 264 aaKnown RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 CTU2Q2VPK5 515 aaKnown RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 GLIPR1L2Q4G1C9 344 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 C3orf33Q6P1S2 294 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 ESPNLQ6ZVH7 1005 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 PGAM4Q8N0Y7 254 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 SMYD1Q8NB12 490 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 ITLN2Q8WWU7 325 aaPredicted RBP18.27■□□□□ 0.52
PTCD3-220ENST00000627371 RND1Q92730 232 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 TAMM41Q96BW9 452 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 ADGRG7Q96K78 797 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 KLHL15Q96M94 604 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 EVA1AQ9H8M9 152 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 TMEM181Q9P2C4 612 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 CLCF1Q9UBD9 225 aa18.27■□□□□ 0.52
PTCD3-220ENST00000627371 MBD3L4A6NDZ8 208 aaPredicted RBP18.26■□□□□ 0.51
PTCD3-220ENST00000627371 MBD3L3A6NE82 208 aaPredicted RBP18.26■□□□□ 0.51
PTCD3-220ENST00000627371 MBD3L5A6NJ08 208 aaPredicted RBP18.26■□□□□ 0.51
PTCD3-220ENST00000627371 SYT5O00445 386 aa18.26■□□□□ 0.51
PTCD3-220ENST00000627371 EIF1AYO14602 144 aaKnown RBP18.26■□□□□ 0.51
PTCD3-220ENST00000627371 ADAMDEC1O15204 470 aa18.26■□□□□ 0.51
PTCD3-220ENST00000627371 PRG2P13727 222 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms