RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CYB561A3Q8NBI2 242 aa13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 TM9SF4Q92544 642 aa13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 PTCHD1Q96NR3 888 aa13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 RAB11FIP5Q9BXF6 653 aa13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 CLEC4MQ9H2X3 399 aaPredicted RBP13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 CNOT2Q9NZN8 540 aaKnown RBP13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 PPIEQ9UNP9 301 aaKnown RBP13.44□□□□□ -0.26
SHROOM1-208ENST00000617339 SDK2Q58EX2 2172 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 GXYLT2A0PJZ3 443 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 A8MVJ9 347 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 EPPINO95925 133 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 GYPBP06028 91 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 MRPL3P09001 348 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 SAGP10523 405 aaPredicted RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 OSMP13725 252 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 RHAGQ02094 409 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 TIGD3Q6B0B8 471 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 SLC22A18Q96BI1 424 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 SPATA2Q9UM82 520 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 COLQQ9Y215 455 aaPredicted RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 FREM2Q5SZK8 3169 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 TPPPO94811 219 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 ANXA11P50995 505 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 CLDN20P56880 219 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 RAB14P61106 215 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 EXOSC2Q13868 293 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 MAPK14Q16539 360 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 ZSWIM7Q19AV6 140 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 ENTPD8Q5MY95 495 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 TMEM64Q6YI46 380 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 OR4F15Q8NGB8 312 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 BBS10Q8TAM1 723 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 POP5Q969H6 163 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 DPH1Q9BZG8 443 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 NDUFB11Q9NX14 153 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 SLC7A7Q9UM01 511 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 OR5K3A6NET4 321 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 IL32P24001 234 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 C21orf58P58505 322 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 MRPS21P82921 87 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 TMEM35AQ53FP2 167 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 ZAR1Q86SH2 424 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 KIF18BQ86Y91 864 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 MFSD9Q8NBP5 474 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 ZFYVE21Q9BQ24 234 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 PHF7Q9BWX1 381 aaPredicted RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 SLC38A1Q9H2H9 487 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 NUDT15Q9NV35 164 aa13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 LSM2Q9Y333 95 aaKnown RBP13.43□□□□□ -0.26
SHROOM1-208ENST00000617339 CDC14CA4D256 554 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 LRRN3E7EW58 273 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 ERGP11308 486 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 NDUFS1P28331 727 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 SOX18P35713 384 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 AHRP35869 848 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 GIPRP48546 466 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 VASPP50552 380 aaPredicted RBP13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 BTG2P78543 158 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CRYZQ08257 329 aaKnown RBP13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 DGAT2L6Q6ZPD8 337 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 LUZP2Q86TE4 346 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 TEX47Q8TBZ9 253 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 THAP3Q8WTV1 239 aaPredicted RBP13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 OR2A5Q96R48 311 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 MAP3K3Q99759 626 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 DPYSL5Q9BPU6 564 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 LRRN3Q9H3W5 708 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 ERVMER34-1Q9H9K5 563 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 MCCC2Q9HCC0 563 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 PNO1Q9NRX1 252 aaKnown RBP13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CD8B2A6NJW9 211 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 ZAR1LA6NP61 321 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CT62P0C5K7 136 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CD8BP10966 210 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CXCL3P19876 107 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 CD79BP40259 229 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 MFSD13AQ14CX5 517 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 FCRL6Q6DN72 434 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 FBXW5Q969U6 566 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 A4GALTQ9NPC4 353 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 THSD1Q9NS62 852 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 ACSS1Q9NUB1 689 aaPredicted RBP13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 FTSJ1Q9UET6 329 aa13.42□□□□□ -0.26
SHROOM1-208ENST00000617339 SH3D21A4FU49 640 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 PRAMEF26H0Y7S4 382 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 IL1AP01583 271 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 RAF1P04049 648 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 SRP9P49458 86 aaKnown RBP13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 MAP2K6P52564 334 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 FBXW4P57775 412 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 ZNF791Q3KP31 576 aaPredicted RBP13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 MTFR2Q6P444 385 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 PAQR7Q86WK9 346 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 NANOGP1Q8N7R0 232 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 BBS1Q8NFJ9 593 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 OR5M3Q8NGP4 307 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 NKIRAS2Q9NYR9 191 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 MMP17Q9ULZ9 603 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 POM121CA8CG34 1229 aa13.41□□□□□ -0.26
SHROOM1-208ENST00000617339 SLC30A4O14863 429 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms