RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FNBP1LQ5T0N5 605 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PRAMEF5Q5TYX0 476 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PRAMEF6Q5VXH4 476 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PAPD7Q5XG87 772 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 KCTD16Q68DU8 428 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 TMEM71Q6P5X7 295 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PQLC2Q6ZP29 291 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 BCDIN3DQ7Z5W3 292 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 TPRA1Q86W33 373 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 SERPINA9Q86WD7 417 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PAQR7Q86WK9 346 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 MEX3DQ86XN8 651 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 GCNT2Q8N0V5 402 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 ARHGAP24Q8N264 748 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PRELID2Q8N945 189 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PAPD5Q8NDF8 572 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 SPATA4Q8NEY3 305 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 OR4D9Q8NGE8 314 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 OR2L2Q8NH16 312 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 OR4L1Q8NH43 312 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 OR4A16Q8NH70 328 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 SLC37A2Q8TED4 501 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 FAR1Q8WVX9 515 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 MS4A14Q96JA4 679 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 DNAJC1Q96KC8 554 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 SFXN2Q96NB2 322 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 BBC3Q96PG8 261 aaPredicted RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 UQCC2Q9BRT2 126 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 TRMOQ9BU70 441 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 MRM3Q9HC36 420 aaKnown RBP5.57□□□□□ -1.52
VPS53-212ENST00000572259 MYNNQ9NPC7 610 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 GPR173Q9NS66 373 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 POT1Q9NUX5 634 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 SMARCAL1Q9NZC9 954 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 RNF150Q9ULK6 438 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 FAM208BQ5VWN6 2430 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 PTPRQQ9UMZ3 2332 aa5.57□□□□□ -1.52
VPS53-212ENST00000572259 FRYQ5TBA9 3013 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TRAV6A0A075B6T7 132 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 IGHV1OR21-1A0A087WYE8 117 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TRBV5-4A0A0C4DH59 114 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TCRBV7S3A2A0A539 114 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FEZF1A0PJY2 475 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 BTBD17A6NE02 478 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 LILRA5A6NI73 299 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FAM157AC9JC47 383 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 GAPDHSO14556 408 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 LIN7AO14910 233 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 POLR1CO15160 346 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 AKR7A2O43488 359 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 B4GAT1O43505 415 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TNFSF15O95150 251 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 APOA1P02647 267 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 CSN3P07498 182 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 CD63P08962 238 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 SAGP10523 405 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 S1PR1P21453 382 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 NMBRP28336 390 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 CD1CP29017 333 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 GABRA5P31644 462 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 DLSTP36957 453 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 HTR2BP41595 481 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 LEPRP48357 1165 aaKnown RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 PRLHRP49683 370 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 LIMK2P53671 638 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 UBE2IP63279 158 aaKnown RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 ZFP36L1Q07352 338 aaKnown RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 GAB1Q13480 694 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 GK2Q14410 553 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 MELKQ14680 651 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 MFSD13AQ14CX5 517 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TRIP13Q15645 432 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 PCK2Q16822 640 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ADPRMQ3LIE5 342 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 AGAP6Q5VW22 663 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 TTC23Q5W5X9 447 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 SUMO4Q6EEV6 95 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FBXO42Q6P3S6 717 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FIGLAQ6QHK4 219 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 WDR74Q6RFH5 385 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 ZNF474Q6S9Z5 364 aaPredicted RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 CD164L2Q6UWJ8 174 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FAM159AQ6UWV7 190 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 LINGO2Q7L985 606 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 NOXA1Q86UR1 476 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ZC3HC1Q86WB0 502 aaKnown RBP5.56□□□□□ -1.52
VPS53-212ENST00000572259 LRRC6Q86X45 466 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ZNF547Q8IVP9 402 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 LAX1Q8IWV1 398 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ZNF248Q8NDW4 579 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 GJC3Q8NFK1 279 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 OR4N2Q8NGD1 307 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 HM13Q8TCT9 377 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 PATE1Q8WXA2 126 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 HAVCR1Q96D42 359 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ATXN7L3BQ96GX2 97 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 CITED1Q99966 193 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 DNTTIP1Q9H147 329 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 FAM96AQ9H5X1 160 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms