RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 JADE3Q92613 823 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 OTUB1Q96FW1 271 aaPredicted RBP6.4□□□□□ -1.38
VPS4A-203ENST00000564399 MRGPRX4Q96LA9 322 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 MUS81Q96NY9 551 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 KCNS3Q9BQ31 491 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 RBM4Q9BWF3 364 aaKnown RBP6.4□□□□□ -1.38
VPS4A-203ENST00000564399 IQCGQ9H095 443 aaKnown RBP6.4□□□□□ -1.38
VPS4A-203ENST00000564399 RAB1BQ9H0U4 201 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 TAS2R7Q9NYW3 318 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 PCDHB10Q9UN67 800 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 CARD8Q9Y2G2 431 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 AMDHD2Q9Y303 409 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 PCDHGB1Q9Y5G3 927 aa6.4□□□□□ -1.38
VPS4A-203ENST00000564399 CCDC151A5D8V7 595 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 A8MT66 165 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 B9A039 149 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TMPRSS2O15393 492 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 HSPA4LO95757 839 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 WNT11O96014 354 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ERCC1P07992 297 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TACSTD2P09758 323 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TFPIP10646 304 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 DAOP14920 347 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 IFNGR1P15260 489 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ATP6V1C1P21283 382 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 GIFP27352 417 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MAP3K8P41279 467 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 PAFAH1B1P43034 410 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 DIO1P49895 249 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 IDH3GP51553 393 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 PLTPP55058 493 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 SUMO3P55854 103 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 PRPS1P60891 318 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 CSNK2A1P68400 391 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 POU6F2P78424 691 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TGFBR3Q03167 851 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 DUSP5Q16690 384 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 IMPG1Q17R60 797 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TSNAXIP1Q2TAA8 658 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 NDUFAF6Q330K2 333 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TIGD2Q4W5G0 525 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MIDNQ504T8 468 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 AWAT1Q58HT5 328 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TEX35Q5T0J7 233 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 C3orf33Q6P1S2 294 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 VHLLQ6RSH7 139 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 KLHL24Q6TFL4 600 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 DEF8Q6ZN54 512 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 GPRIN3Q6ZVF9 776 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 SVOPLQ8N434 492 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF527Q8NB42 609 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 OR52E4Q8NGH9 312 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ZFP28Q8NHY6 868 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ZHX1-C8orf76Q96EF9 292 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MS4A4EQ96PG1 132 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 JMJD8Q96S16 334 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MRPL57Q9BQC6 102 aaKnown RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ERP44Q9BS26 406 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MRPL46Q9H2W6 279 aaKnown RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 SLC17A5Q9NRA2 495 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 SERINC1Q9NRX5 453 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 GIN1Q9NXP7 522 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 UPB1Q9UBR1 384 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 MALT1Q9UDY8 824 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ICAM5Q9UMF0 924 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 POLR3HQ9Y535 204 aaPredicted RBP6.39□□□□□ -1.39
VPS4A-203ENST00000564399 TIMM22Q9Y584 194 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 PCDHB14Q9Y5E9 798 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 ACTL7BQ9Y614 415 aa6.39□□□□□ -1.39
VPS4A-203ENST00000564399 IGKV3D-15A0A087WSY6 115 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 SERINC4A6NH21 518 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 B4DSR2 109 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 GPR171O14626 319 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 KLF11O14901 512 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 PDPK1O15530 556 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 CYP7B1O75881 506 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 H6PDO95479 791 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 ITGA5P08648 1049 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 IFI6P09912 130 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 OR4A8P0C604 315 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 DDX5P17844 614 aaKnown RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 CDH2P19022 906 aaPredicted RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 PGCP20142 388 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 LIMS1P48059 325 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 PPOXP50336 477 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 HILS1P60008 231 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 SLC25A3Q00325 362 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 PDK3Q15120 406 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 QPRTQ15274 297 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 TRIP10Q15642 601 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 ABLIM2Q6H8Q1 611 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 SHISA2Q6UWI4 295 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 CASP12Q6UXS9 341 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 TMPPEQ6ZT21 453 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 MTDHQ86UE4 582 aaKnown RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 CREG2Q8IUH2 290 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 C17orf78Q8N4C9 275 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 WDR60Q8WVS4 1066 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 NEU4Q8WWR8 484 aaPredicted RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 HOXB13Q92826 284 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms