RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZNF69Q9UC07 566 aa12.36□□□□□ -0.43
CLK3-206ENST00000562078 TICRRQ7Z2Z1 1910 aa12.36□□□□□ -0.43
CLK3-206ENST00000562078 EDDM13A0A1B0GTR0 161 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 SLC5A10A0PJK1 596 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 OR2M5A3KFT3 312 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 E7EQ34 232 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 PIP5K1CO60331 668 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 OR10H3O60404 316 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 F12P00748 615 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 CATP04040 527 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 FBP1P09467 338 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 GIPP09681 153 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 ADCYAP1P18509 176 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 THBS2P35442 1172 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 OPRD1P41143 372 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 NAE1Q13564 534 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 DDX39BQ13838 428 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 ZNF234Q14588 700 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 HBMQ6B0K9 141 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 NOXRED1Q6NXP6 359 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 MSANTD1Q6ZTZ1 278 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 THOC6Q86W42 341 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 SLITRK4Q8IW52 837 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 NRSN1Q8IZ57 195 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 GNPDA2Q8TDQ7 276 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 NUS1Q96E22 293 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 GAS2L1Q99501 681 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 RPP25Q9BUL9 199 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 TRMT61BQ9BVS5 477 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 TMPRSS13Q9BYE2 586 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 GPATCH2Q9NW75 528 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 MED11Q9P086 117 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 STOX2Q9P2F5 926 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 COLQQ9Y215 455 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 ENTPD4Q9Y227 616 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 CCDC88CQ9P219 2028 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 C1orf226A1L170 272 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 SLC16A8O95907 504 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 ADAP00813 363 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 C6P13671 934 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 ADRB3P13945 408 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 PRPS1L1P21108 318 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 PAICSP22234 425 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 GJA4P35212 333 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 P2RY4P51582 365 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 LIM2P55344 173 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 PRR5P85299 388 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 MLLT1Q03111 559 aaPredicted RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 ELAVL3Q14576 367 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 AGTRAPQ6RW13 159 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 PRSS45Q7RTY3 260 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 TRAPPC5Q8IUR0 188 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 CMIPQ8IY22 773 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 SVBPQ8N300 66 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 LNX2Q8N448 690 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 SMRP1Q8NCR6 262 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 THAP6Q8TBB0 222 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 GEMIN6Q8WXD5 167 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 RAD51AP1Q96B01 352 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 CMTM7Q96FZ5 175 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 POLR2J3Q9H1A7 115 aaKnown RBP12.35□□□□□ -0.43
CLK3-206ENST00000562078 OR2AG1Q9H205 316 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 OR10H1Q9Y4A9 318 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 ENPP4Q9Y6X5 453 aa12.35□□□□□ -0.43
CLK3-206ENST00000562078 CKAP5Q14008 2032 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 TMEM265A0A087WTH1 108 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 TBC1D3BA6NDS4 549 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 ARPC1BO15143 372 aaKnown RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 GPR37O15354 613 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 ICOSLGO75144 302 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 CDC123O75794 336 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 HIST1H2ABP04908 130 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 AMD1P17707 334 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 NR0B1P51843 470 aaKnown RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 RAP2BP61225 183 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 SRSF11Q05519 484 aaKnown RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 STX4Q12846 297 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 SCARB2Q14108 478 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 HABP2Q14520 560 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 MINDY4Q4G0A6 757 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 DHRS7BQ6IAN0 325 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 ESPNLQ6ZVH7 1005 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 MTSS1LQ765P7 747 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 HIST3H2AQ7L7L0 130 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 FAM26EQ8N5C1 309 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 ZNF485Q8NCK3 441 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 TMEM185AQ8NFB2 350 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 HIST1H2ACQ93077 130 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 CHFRQ96EP1 664 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 LCORQ96JN0 433 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 MTERF1Q99551 399 aaKnown RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 MAP3K3Q99759 626 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 C7orf50Q9BRJ6 194 aaKnown RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 FUZQ9BT04 418 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 ENKD1Q9H0I2 346 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 FN3KQ9H479 309 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 GULP1Q9UBP9 304 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 CD207Q9UJ71 328 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 CBLCQ9ULV8 474 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 GPR52Q9Y2T5 361 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms