RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SPOCK1Q08629 439 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 PDK3Q15120 406 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 SLC25A53Q5H9E4 307 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 UBAP2Q5T6F2 1119 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 ANKRD26P1Q6NSI1 321 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 C8orf74Q6P047 294 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 MEX3DQ86XN8 651 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 CNPY4Q8N129 248 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 RFWD2Q8NHY2 731 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 SLC25A43Q8WUT9 341 aaPredicted RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 DCAKDQ8WVC6 231 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 TMEM234Q8WY98 164 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 C16orf58Q96GQ5 468 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 EGLN2Q96KS0 407 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 CCT7Q99832 543 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 KLHDC3Q9BQ90 382 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 KCNF1Q9H3M0 494 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 CDC42EP4Q9H3Q1 356 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 PIGUQ9H490 435 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 ZCCHC3Q9NUD5 404 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 FAF1Q9UNN5 650 aaPredicted RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 SPIN1Q9Y657 262 aaPredicted RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 IGKV3D-15A0A087WSY6 115 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 A0A087WUV0 522 aaPredicted RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 VWC2LB2RUY7 222 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 SLC28A1O00337 649 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 ZNF264O43296 627 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 MRPL33O75394 65 aaKnown RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 IGHV3-9P01782 118 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 UBL4AP11441 157 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 DIO1P49895 249 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 SLC7A5Q01650 507 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 LASP1Q14847 261 aaKnown RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 MLC1Q15049 377 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 QPRTQ15274 297 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 TOMM34Q15785 309 aaPredicted RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 CR1LQ2VPA4 569 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 CFAP157Q5JU67 520 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 KLHL24Q6TFL4 600 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 B3GLCTQ6Y288 498 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 TIFABQ6ZNK6 161 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 R3HCC1LQ7Z5L2 792 aaKnown RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 MTDHQ86UE4 582 aaKnown RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 C17orf78Q8N4C9 275 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 ADAMTS15Q8TE58 950 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 ST8SIA1Q92185 356 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 ZNF75CPQ92670 426 aaPredicted RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 CDS1Q92903 461 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 OTUB1Q96FW1 271 aaPredicted RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 MUS81Q96NY9 551 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 PRR14Q9BWN1 585 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 GSTO2Q9H4Y5 243 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 C1orf109Q9NX04 203 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 FBXO9Q9UK97 447 aaPredicted RBP14.86□□□□□ -0.03
VPS29-204ENST00000548259 AMDHD2Q9Y303 409 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 DTNAQ9Y4J8 743 aa14.86□□□□□ -0.03
VPS29-204ENST00000548259 PLCE1Q9P212 2302 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 EXOC1LA0A1B0GW35 172 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 AKAP10O43572 662 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 LY6HO94772 140 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 HMGN2P05204 90 aaKnown RBP14.85□□□□□ -0.03
VPS29-204ENST00000548259 ZNF23P17027 643 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 PCMT1P22061 227 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 FRKP42685 505 aaPredicted RBP14.85□□□□□ -0.03
VPS29-204ENST00000548259 ASMTP46597 345 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 FOXA1P55317 472 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 TIGD2Q4W5G0 525 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 DCST2Q5T1A1 773 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 CDC73Q6P1J9 531 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 TMPPEQ6ZT21 453 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 HOMEZQ8IX15 550 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 PIGXQ8TBF5 258 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 MTERF3Q96E29 417 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 ZMYND19Q96E35 227 aaPredicted RBP14.85□□□□□ -0.03
VPS29-204ENST00000548259 FBXO17Q96EF6 278 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 FAM120BQ96EK7 910 aaKnown RBP14.85□□□□□ -0.03
VPS29-204ENST00000548259 KCNS3Q9BQ31 491 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 C1QTNF6Q9BXI9 259 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 PLA2G12AQ9BZM1 189 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 ADAM19Q9H013 955 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 PARPBPQ9NWS1 579 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 MALT1Q9UDY8 824 aa14.85□□□□□ -0.03
VPS29-204ENST00000548259 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS29-204ENST00000548259 FREM1Q5H8C1 2179 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 A0A1W2PR80 420 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 WIPF1O43516 503 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 WNT11O96014 354 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 ERCC1P07992 297 aaPredicted RBP14.84□□□□□ -0.03
VPS29-204ENST00000548259 TFPIP10646 304 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 UROSP10746 265 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 NEFHP12036 1026 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 PRPH2P23942 346 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 EDNRAP25101 427 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 FKBP2P26885 142 aaKnown RBP14.84□□□□□ -0.03
VPS29-204ENST00000548259 CASQ1P31415 396 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 RPL3P39023 403 aaKnown RBP14.84□□□□□ -0.03
VPS29-204ENST00000548259 TP53BP2Q13625 1128 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 GABRA6Q16445 453 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 SYT14P1Q58G82 188 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 ABLIM2Q6H8Q1 611 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms