RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 IFT52Q9Y366 437 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 NKX2-6A6NCS4 301 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 BBIP1A8MTZ0 92 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 C5orf58C9J3I9 102 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 C19orf84I3L1E1 186 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 EIF1AYO14602 144 aaKnown RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 CTSSP25774 331 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 SHC1P29353 583 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 SLC6A8P48029 635 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 RPS3AP61247 264 aaKnown RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 TFF3Q07654 80 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 LARS2Q15031 903 aaKnown RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 TRMT5Q32P41 509 aaKnown RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 MMEL1Q495T6 779 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 LIN52Q52LA3 116 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 REP15Q6BDI9 236 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 ESPNLQ6ZVH7 1005 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 PTOV1Q86YD1 416 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 GRAMD2AQ8IUY3 354 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 RP9Q8TA86 221 aaKnown RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 TMEM234Q8WY98 164 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 FIG4Q92562 907 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 DOCK7Q96N67 2140 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 PINK1Q9BXM7 581 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 TMEM185BQ9H7F4 350 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 CHST11Q9NPF2 352 aa17.85■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF443Q9Y2A4 671 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-209ENST00000532725 SLC22A20A6NK97 555 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 FXYD1O00168 92 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 AP3D1O14617 1153 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 MRASO14807 208 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 PABPC4LP0CB38 370 aaKnown RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ME2P23368 584 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 SLC6A2P23975 617 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ACAA2P42765 397 aaKnown RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 IDH2P48735 452 aaKnown RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 GZMMP51124 257 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 FOXF2Q12947 444 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 SCARB2Q14108 478 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ZSWIM7Q19AV6 140 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 SLC25A35Q3KQZ1 300 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 TMEM176BQ3YBM2 270 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF311Q5JNZ3 666 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 RNF220Q5VTB9 566 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 PLEKHM3Q6ZWE6 761 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 NET1Q7Z628 596 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 OR10D3Q8NH80 312 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 OR2V1Q8NHB1 315 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 KLHL15Q96M94 604 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ZFP3Q96NJ6 502 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 SLC39A3Q9BRY0 314 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 SPATA9Q9BWV2 254 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 NSRP1Q9H0G5 558 aaKnown RBP17.84■□□□□ 0.45
CPSF1-209ENST00000532725 MYLK2Q9H1R3 596 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF175Q9Y473 711 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 MED12LQ86YW9 2145 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 CENPEQ02224 2701 aa17.84■□□□□ 0.45
CPSF1-209ENST00000532725 ADGRG4Q8IZF6 3080 aa17.83■□□□□ 0.45
CPSF1-209ENST00000532725 INTS1Q8N201 2190 aaKnown RBP17.83■□□□□ 0.45
CPSF1-209ENST00000532725 CFAP73A6NFT4 308 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 FAM90A27PA6NNH2 459 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 FAAHO00519 579 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 TNFSF11O14788 317 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 IL18BPO95998 194 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 TMIGD3P0DMS9 266 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-209ENST00000532725 SFTPDP35247 375 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 APOBEC1P41238 236 aaKnown RBP17.83■□□□□ 0.44
CPSF1-209ENST00000532725 EIF1AXP47813 144 aaKnown RBP17.83■□□□□ 0.44
CPSF1-209ENST00000532725 RBBP4Q09028 425 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 MERTKQ12866 999 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 EPS8Q12929 822 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 PON3Q15166 354 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 SGCBQ16585 318 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 PIGWQ7Z7B1 504 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 SERPINA11Q86U17 422 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 TREML1Q86YW5 311 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 ZNF440Q8IYI8 595 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 POU5F2Q8N7G0 328 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 OR10A6Q8NH74 314 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 ZNF563Q8TA94 476 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 FNDC9Q8TBE3 224 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 OSTF1Q92882 214 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 INTS12Q96CB8 462 aaKnown RBP17.83■□□□□ 0.44
CPSF1-209ENST00000532725 PAQR5Q9NXK6 330 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-209ENST00000532725 PRDM4Q9UKN5 801 aa17.83■□□□□ 0.44
CPSF1-209ENST00000532725 DVL2O14641 736 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 CXCL13O43927 109 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 GCM2O75603 506 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-209ENST00000532725 GKN3PP0CG01 181 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 COX4I1P13073 169 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 BMP5P22003 454 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 OPRM1P35372 400 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 AGFG1P52594 562 aaKnown RBP17.82■□□□□ 0.44
CPSF1-209ENST00000532725 CARD18P57730 90 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 SELENBP1Q13228 472 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 RABL3Q5HYI8 236 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 PDSS1Q5T2R2 415 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 HBMQ6B0K9 141 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 GRINAQ7Z429 371 aa17.82■□□□□ 0.44
CPSF1-209ENST00000532725 P4HA3Q7Z4N8 544 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms