RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TMEM239Q8WW34 195 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 THAP4Q8WY91 577 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 PRORYQ9H606 182 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 TMEM5Q9Y2B1 443 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 LYPD3O95274 346 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 FPR3P25089 353 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 GGT2P36268 569 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 RAPSNQ13702 412 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 KCTD21Q4G0X4 260 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 ALG10BQ5I7T1 473 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 CDK20Q8IZL9 346 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 ZNF786Q8N393 782 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 FBLIM1Q8WUP2 373 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 TMEM255BQ8WV15 326 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 CRELD1Q96HD1 420 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 IP6K3Q96PC2 410 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 REV1Q9UBZ9 1251 aa19.38■□□□□ 0.69
VPS28-212ENST00000530836 HTR3EA5X5Y0 456 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 FBXO45P0C2W1 286 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 OMPP47874 163 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 GSSP48637 474 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 TOP3AQ13472 1001 aaPredicted RBP19.37■□□□□ 0.69
VPS28-212ENST00000530836 TMEM154Q6P9G4 183 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 ARMC10Q8N2F6 343 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 ZNF160Q9HCG1 818 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 CARD8Q9Y2G2 431 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 MED31Q9Y3C7 131 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 LOC400499M0QZD8 3231 aa19.37■□□□□ 0.69
VPS28-212ENST00000530836 ADAM11O75078 769 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 OR2J2O76002 312 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 ANGPTL1O95841 491 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 CHMP24386 653 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 IL5RAQ01344 420 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 PTGES3Q15185 160 aaKnown RBP19.36■□□□□ 0.69
VPS28-212ENST00000530836 COL28A1Q2UY09 1125 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 RBM48Q5RL73 367 aaKnown RBP19.36■□□□□ 0.69
VPS28-212ENST00000530836 PRICKLE2Q7Z3G6 844 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 MRGPREQ86SM8 312 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 MARCH3Q86UD3 253 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 CADM2Q8N3J6 435 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 TMCO5AQ8N6Q1 288 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 GATSQ8NAP1 163 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 RNF217Q8TC41 542 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 RNF138Q8WVD3 245 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 HDAC2Q92769 488 aaKnown RBP19.36■□□□□ 0.69
VPS28-212ENST00000530836 HGDQ93099 445 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 ZNF426Q9BUY5 554 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 C12orf10Q9HB07 376 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 POLHQ9Y253 713 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 YARS2Q9Y2Z4 477 aaKnown RBP19.36■□□□□ 0.69
VPS28-212ENST00000530836 ZAR1LA6NP61 321 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 HCRTR2O43614 444 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 OR6B1O95007 311 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 PNMTP11086 282 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 EPHA2P29317 976 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 CDC42P60953 191 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 PRKCDQ05655 676 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 C17orf67Q0P5P2 114 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 NTRK2Q16620 822 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 OPN5Q6U736 354 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 LINC00114Q6XXX2 140 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 RASSF6Q6ZTQ3 369 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 NRMQ8IXM6 262 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 GRHL3Q8TE85 626 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 SPACA9Q96E40 222 aaPredicted RBP19.36■□□□□ 0.69
VPS28-212ENST00000530836 RASL10BQ96S79 203 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 P4HTMQ9NXG6 502 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 BLOC1S6Q9UL45 172 aa19.36■□□□□ 0.69
VPS28-212ENST00000530836 MGAQ8IWI9 3026 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 H3BN98 237 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 KLF4O43474 513 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 MPZL2O60487 215 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 PGCP20142 388 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 P2RX1P51575 399 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 CTBP2P56545 445 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 FBXW4P57775 412 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 CSNK2BP67870 215 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 ZNF117Q03924 483 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 CD47Q08722 323 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 CBFBQ13951 182 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 DEFB109BQ30KR1 87 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 NDUFAF6Q330K2 333 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 LYPD8Q6UX82 237 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 C16orf47Q6ZP98 133 aaPredicted RBP19.35■□□□□ 0.69
VPS28-212ENST00000530836 OR5W2Q8NH69 310 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 SLC19A3Q9BZV2 496 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 SDHAF3Q9NRP4 125 aa19.35■□□□□ 0.69
VPS28-212ENST00000530836 A0A087WUJ7 227 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 TP53I11O14683 189 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 ITGA10O75578 1167 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 IDH2P48735 452 aaKnown RBP19.34■□□□□ 0.69
VPS28-212ENST00000530836 CCR4P51679 360 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 SUMO3P55854 103 aaPredicted RBP19.34■□□□□ 0.69
VPS28-212ENST00000530836 CXCR4P61073 352 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 TEKQ02763 1124 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 CHAF1BQ13112 559 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 ATP1A4Q13733 1029 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 C6orf141Q5SZD1 244 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 DESI1Q6ICB0 168 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 CBLN3Q6UW01 205 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms