RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 AGPAT4Q9NRZ5 378 aa10.5□□□□□ -0.73
SCN9A-204ENST00000452182 ACER3Q9NUN7 267 aa10.5□□□□□ -0.73
SCN9A-204ENST00000452182 TAS2R10Q9NYW0 307 aa10.5□□□□□ -0.73
SCN9A-204ENST00000452182 NTNG1Q9Y2I2 539 aa10.5□□□□□ -0.73
SCN9A-204ENST00000452182 A0A1B0GVC2 190 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 TCRBV3S1A0A5B6 114 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 M0R3H8 397 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 GMFGO60234 142 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 SUSD5O60279 629 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 HCN1O60741 890 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 TRAPPC6AO75865 159 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 IFNW1P05000 195 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 GPIP06744 558 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 CELA3AP09093 270 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 NQO1P15559 274 aaKnown RBP10.49□□□□□ -0.73
SCN9A-204ENST00000452182 HK1P19367 917 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 PSMA4P25789 261 aaKnown RBP10.49□□□□□ -0.73
SCN9A-204ENST00000452182 MST1P26927 711 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 HTR3AP46098 478 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 OR1E2P47887 323 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 IDH2P48735 452 aaKnown RBP10.49□□□□□ -0.73
SCN9A-204ENST00000452182 MAP2K6P52564 334 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 SESN3P58005 492 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 TOMM20Q15388 145 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 NHSL2Q5HYW2 709 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 WBP2NLQ6ICG8 309 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 GRINAQ7Z429 371 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 ZNF563Q8TA94 476 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 PHF10Q8WUB8 498 aaKnown RBP10.49□□□□□ -0.73
SCN9A-204ENST00000452182 ZNF524Q96C55 264 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 C7orf34Q96L11 122 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 BBC3Q96PG8 261 aaPredicted RBP10.49□□□□□ -0.73
SCN9A-204ENST00000452182 SLX1AQ9BQ83 275 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 PIGQQ9BRB3 760 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 ADAM19Q9H013 955 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 VDAC3Q9Y277 283 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 ATRXP46100 2492 aa10.49□□□□□ -0.73
SCN9A-204ENST00000452182 KALRNO60229 2985 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 FREM3P0C091 2139 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 ERICH4A6NGS2 130 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 TTLL8A6PVC2 850 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 CDC40O60508 579 aaKnown RBP eCLIP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 SEMA7AO75326 666 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 GP1BBP13224 206 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 TNFRSF1BP20333 461 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 CHMP24386 653 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 HTR2AP28223 471 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 ELK4P28324 431 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 GFRA1P56159 465 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 B3GALT5-AS1P59052 145 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 FAM98BQ52LJ0 330 aaKnown RBP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 ZNF613Q6PF04 617 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 YRDCQ86U90 279 aaKnown RBP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 RBM45Q8IUH3 476 aaKnown RBP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 OR14L1PQ8NHC6 308 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 VANGL1Q8TAA9 524 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 POC1BQ8TC44 478 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 DNAJA4Q8WW22 397 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-204ENST00000452182 GPR137Q96N19 417 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 MCHR1Q99705 422 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 AMBRA1Q9C0C7 1298 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 C12orf10Q9HB07 376 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 TMEM27Q9HBJ8 222 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 IL1RAPQ9NPH3 570 aa10.48□□□□□ -0.73
SCN9A-204ENST00000452182 TRGV5A0A0B4J1U4 118 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 A0A0B4J2E0 115 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 A0A1B0GX12 115 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 DHRS12A0PJE2 317 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 NPIPA5E9PKD4 350 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ACTL6AO96019 429 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ITGA2P17301 1181 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 FKBP2P26885 142 aaKnown RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 APOBEC1P41238 236 aaKnown RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 MAGEA2P43356 314 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 TDGF1P3P51864 188 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ACTR3P61158 418 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 HOXC5Q00444 222 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 CHRNB3Q05901 458 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 FOXF1Q12946 379 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 OR1Q1Q15612 314 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 IQCCQ4KMZ1 466 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 WIPI1Q5MNZ9 446 aaPredicted RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ENTPD8Q5MY95 495 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 AAGABQ6PD74 315 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ULK3Q6PHR2 472 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 PLEKHM3Q6ZWE6 761 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 TRILQ7L0X0 811 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 PIWIL3Q7Z3Z3 882 aaKnown RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 TSEN54Q7Z6J9 526 aaKnown RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 SPATA24Q86W54 205 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ADGRG5Q8IZF4 528 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 NEIL3Q8TAT5 605 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ADAMTS16Q8TE57 1224 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 C3orf49Q96BT1 292 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 SLC47A1Q96FL8 570 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 DUS3LQ96G46 650 aaKnown RBP10.47□□□□□ -0.73
SCN9A-204ENST00000452182 DEFB127Q9H1M4 99 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ASF1BQ9NVP2 202 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 ACAD8Q9UKU7 415 aa10.47□□□□□ -0.73
SCN9A-204ENST00000452182 NPIPA1Q9UND3 350 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms