RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CBFBQ13951 182 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 TOMM20Q15388 145 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 BCL2A1Q16548 175 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 NRF1Q16656 503 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.21□□□□□ -0.61
USP40-205ENST00000430158 INTS11Q5TA45 600 aaKnown RBP11.21□□□□□ -0.61
USP40-205ENST00000430158 ADGRE4PQ86SQ3 457 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ATCAYQ86WG3 371 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 LSRQ86X29 649 aaPredicted RBP11.21□□□□□ -0.61
USP40-205ENST00000430158 KRT73Q86Y46 540 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ARMC8Q8IUR7 673 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ZNF440Q8IYI8 595 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 OR4D11Q8NGI4 311 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ST8SIA1Q92185 356 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 SARAFQ96BY9 339 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 DTNBP1Q96EV8 351 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 MRGPRX4Q96LA9 322 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 SFXN2Q96NB2 322 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ARHGDIGQ99819 225 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 SPATA5L1Q9BVQ7 753 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 PINK1Q9BXM7 581 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ADAM19Q9H013 955 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 PNPLA3Q9NST1 481 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 OSGIN2Q9Y236 505 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 CFAP73A6NFT4 308 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 LINC01387J3KSC0 135 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 CYP7B1O75881 506 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 GGT1P19440 569 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 PGCP20142 388 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 HTR2AP28223 471 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 EIF1P41567 113 aaKnown RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 SLC6A8P48029 635 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 ZNF41P51814 821 aaPredicted RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 SUCLG1P53597 346 aaKnown RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 HOXC5Q00444 222 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 ELOAQ14241 798 aaKnown RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 NPTX1Q15818 432 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 CTU2Q2VPK5 515 aaKnown RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 SPATS1Q496A3 300 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 C16orf89Q6UX73 402 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 PLEKHM3Q6ZWE6 761 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 GGNQ86UU5 652 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 TSPYL5Q86VY4 417 aaPredicted RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 LACC1Q8IV20 430 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 MARVELD2Q8N4S9 558 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 RNF148Q8N7C7 305 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 SMYD1Q8NB12 490 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 FAM156AQ8NDB6 213 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 BHLHE22Q8NFJ8 381 aaPredicted RBP11.2□□□□□ -0.62
USP40-205ENST00000430158 OR5M9Q8NGP3 310 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 ADGRG7Q96K78 797 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 RNF145Q96MT1 663 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 DMRTA2Q96SC8 542 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 PIGQQ9BRB3 760 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 TMUB1Q9BVT8 246 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 NDE1Q9NXR1 346 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 ADA2Q9NZK5 511 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 TINAGQ9UJW2 476 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 FAM215AQ9Y5M1 114 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 FREM1Q5H8C1 2179 aa11.2□□□□□ -0.62
USP40-205ENST00000430158 KDM4EB2RXH2 506 aaPredicted RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 H0YC42 278 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 CXCR6O00574 342 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ADAMDEC1O15204 470 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 FESP07332 822 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ABOP16442 354 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ELK4P28324 431 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 SHC1P29353 583 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 RYKP34925 604 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 IDH2P48735 452 aaKnown RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 CCR4P51679 360 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 TPD52P55327 224 aaPredicted RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 CLDN20P56880 219 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 RAC1P63000 192 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 CBX1P83916 185 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 RBPJQ06330 500 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 CYBRD1Q53TN4 286 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 SAMD4BQ5PRF9 694 aaKnown RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 RAET1LQ5VY80 246 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 AAGABQ6PD74 315 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 SEM1Q6ZVN7 128 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ZNF550Q7Z398 422 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 CD163Q86VB7 1156 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ADGRG3Q86Y34 549 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ULK2Q8IYT8 1036 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 RPRMLQ8N4K4 120 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 TMCO5AQ8N6Q1 288 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 LSMEM1Q8N8F7 131 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 PHF10Q8WUB8 498 aaKnown RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 UCN2Q96RP3 112 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 KCTD14Q9BQ13 255 aaPredicted RBP11.19□□□□□ -0.62
USP40-205ENST00000430158 PRR14Q9BWN1 585 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 EXO5Q9H790 373 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 OSGIN1Q9UJX0 560 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 ACAD8Q9UKU7 415 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 AP4B1Q9Y6B7 739 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 BAHCC1Q9P281 2608 aa11.19□□□□□ -0.62
USP40-205ENST00000430158 WIPF3A6NGB9 483 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 AHRRA9YTQ3 701 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 SEMA7AO75326 666 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms