RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 NEURL3Q96EH8 262 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 LINC00615Q96LM1 132 aaPredicted RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 ZNF578Q96N58 590 aaPredicted RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 USB1Q9BQ65 265 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 SCPEP1Q9HB40 452 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 MYNNQ9NPC7 610 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 FANCFQ9NPI8 374 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 AHSPQ9NZD4 102 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 LINC01553A4QN01 128 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 GNB5O14775 395 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 IGF2P01344 180 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 HMGN2P05204 90 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 BMP7P18075 431 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 PSMB5P28074 263 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 ACADLP28330 430 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 NAA10P41227 235 aaPredicted RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 MTNR1BP49286 362 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 DPTQ07507 201 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 HNRNPA1L2Q32P51 320 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 PRPF38BQ5VTL8 546 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 C1orf94Q6P1W5 598 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 CD200R1LQ6Q8B3 271 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 ZNF765Q7L2R6 523 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 AMER3Q8N944 861 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 OR5M1Q8NGP8 315 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 OR52I2Q8NH67 350 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 LILRB1Q8NHL6 650 aaPredicted RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 GNPDA2Q8TDQ7 276 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 OR5P2Q8WZ92 322 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 CXorf40BQ96DE9 158 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 IFT27Q9BW83 186 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 HCAR1Q9BXC0 346 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 SLC6A15Q9H2J7 730 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 CACYBPQ9HB71 228 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 FBXL4Q9UKA2 621 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 MRPS23Q9Y3D9 190 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 AP1M2Q9Y6Q5 423 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 ZNF98A6NK75 572 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 C5orf67F2Z3F1 127 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 PLPP1O14494 284 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 CASC3O15234 703 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 OR1F1O43749 312 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 SDC3O75056 442 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 STX11O75558 287 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 PRNPP04156 253 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 PSMB1P20618 241 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 SSR2P43308 183 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 VASNQ6EMK4 673 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 PAQR7Q86WK9 346 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 OR2T33Q8NG76 320 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 NPAS1Q99742 590 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 DPH7Q9BTV6 452 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 ADAT1Q9BUB4 502 aaKnown RBP12.86□□□□□ -0.35
SDC1-202ENST00000381150 SHARPINQ9H0F6 387 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 SLC39A1Q9NY26 324 aa12.86□□□□□ -0.35
SDC1-202ENST00000381150 REV3LO60673 3130 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ARPC4-TTLL3A0A0A6YYG9 625 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MFSD2BA6NFX1 497 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 FOXE1O00358 373 aaPredicted RBP12.85□□□□□ -0.35
SDC1-202ENST00000381150 ATG12O94817 140 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 CHRM4P08173 479 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 POU2F2P09086 479 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 GRPRP30550 384 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 PSMB10P40306 273 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 PITPNAQ00169 270 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MC2RQ01718 297 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ODF4Q2M2E3 257 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 IKBIPQ70UQ0 350 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ARL14Q8N4G2 192 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 OR10Z1Q8NGY1 313 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 PRRC1Q96M27 445 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MNTQ99583 582 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 CACNA1IQ9P0X4 2223 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 FLRT2O43155 660 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 CREBL2O60519 120 aaPredicted RBP12.85□□□□□ -0.35
SDC1-202ENST00000381150 C6P13671 934 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ST8SIA6P61647 398 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 HEPHL1Q6MZM0 1159 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 NXPE4Q6UWF7 544 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MORN4Q8NDC4 146 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 OR8S1Q8NH09 359 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ZDHHC1Q8WTX9 485 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MCHR1Q99705 422 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 PDCD1LG2Q9BQ51 273 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 MED11Q9P086 117 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 ZNF175Q9Y473 711 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 TRANK1O15050 2925 aa12.85□□□□□ -0.35
SDC1-202ENST00000381150 C17orf113A0A1B0GUU1 675 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 GOSR2O14653 212 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 SCAMP1O15126 338 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 MT-ND5P03915 603 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 ZNF35P13682 527 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 RAB3AP20336 220 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 S100A11P31949 105 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 DCTDP32321 178 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 TRHRP34981 398 aaPredicted RBP12.84□□□□□ -0.35
SDC1-202ENST00000381150 HLXQ14774 488 aaPredicted RBP12.84□□□□□ -0.35
SDC1-202ENST00000381150 PGGHGQ32M88 737 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 NHLRC3Q5JS37 347 aa12.84□□□□□ -0.35
SDC1-202ENST00000381150 OR9A1PQ8NGU1 263 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms