RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 RGNQ15493 299 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 FBXL19-AS1Q494R0 122 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 LILRA2Q8N149 483 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 C10orf111Q8N326 155 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 OR10D3Q8NH80 312 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 SLC38A5Q8WUX1 472 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 RAB3IPQ96QF0 476 aaPredicted RBP14.21□□□□□ -0.13
CLN3-201ENST00000333496 MTHFD2LQ9H903 347 aaPredicted RBP14.21□□□□□ -0.13
CLN3-201ENST00000333496 RNF122Q9H9V4 155 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.21□□□□□ -0.13
CLN3-201ENST00000333496 VAPAQ9P0L0 249 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 STOML1Q9UBI4 398 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 P2RX2Q9UBL9 471 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 MAST4O15021 2626 aa14.21□□□□□ -0.14
CLN3-201ENST00000333496 DSPPQ9NZW4 1301 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 TRBV5-3A0A0A0MS03 114 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 A0A1W2PP18 115 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 TNFSF11O14788 317 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 AQP8O94778 261 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 NUDT7P0C024 238 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 EIF1AXP47813 144 aaKnown RBP14.2□□□□□ -0.14
CLN3-201ENST00000333496 SNTB1Q13884 538 aaKnown RBP14.2□□□□□ -0.14
CLN3-201ENST00000333496 ESPNLQ6ZVH7 1005 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 ASRGL1Q7L266 308 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 P4HA3Q7Z4N8 544 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 CNOT9Q92600 299 aaKnown RBP14.2□□□□□ -0.14
CLN3-201ENST00000333496 MRGPRX4Q96LA9 322 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 SFXN3Q9BWM7 321 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 ZNF175Q9Y473 711 aa14.2□□□□□ -0.14
CLN3-201ENST00000333496 A0A1W2PNV4 684 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 CXCL13O43927 109 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 HNRNPCL1O60812 293 aaKnown RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 BCHEP06276 602 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 BMP2P12643 396 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 NID1P14543 1247 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 ME2P23368 584 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 SFTPDP35247 375 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 SLC6A8P48029 635 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 SESN3P58005 492 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 SGCBQ16585 318 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 METTL21CQ5VZV1 264 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 DLEU7Q6UYE1 221 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 PMM1Q92871 262 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 TMEM19Q96HH6 336 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 KLHL15Q96M94 604 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 LRRC37BQ96QE4 947 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 IKZF5Q9H5V7 419 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 TRIM33Q9UPN9 1127 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 GMEB1Q9Y692 573 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 TACC2O95359 2948 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 LRBAP50851 2863 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 EEF1E1-BLOC1S5C9J1V9 151 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 EEF1E1O43324 174 aaKnown RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 IL7RP16871 459 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 PGCP20142 388 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 KIR2DL2P43627 348 aaPredicted RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 CRISP3P54108 245 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 FADDQ13158 208 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 GUSBP1Q15486 140 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 RPS26P11Q5JNZ5 115 aaPredicted RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 OR2A2Q6IF42 318 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 VWA1Q6PCB0 445 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 GDF7Q7Z4P5 450 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 RETREG3Q86VR2 466 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 OR2V1Q8NHB1 315 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 WDR60Q8WVS4 1066 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 ST8SIA1Q92185 356 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 RNASE6Q93091 150 aaKnown RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 MAL2Q969L2 176 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 COQ10BQ9H8M1 238 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 EXOSC3Q9NQT5 275 aaKnown RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 DNAJB12Q9NXW2 375 aaKnown RBP14.19□□□□□ -0.14
CLN3-201ENST00000333496 TEX15Q9BXT5 2789 aa14.19□□□□□ -0.14
CLN3-201ENST00000333496 FREM1Q5H8C1 2179 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 CRHP06850 196 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 DBIP07108 87 aaKnown RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 UQCRC1P31930 480 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 RYKP34925 604 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 RASSF2P50749 326 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 TMEM176BQ3YBM2 270 aaPredicted RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 MRPL2Q5T653 305 aaKnown RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 HBMQ6B0K9 141 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 LUZP2Q86TE4 346 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 LSRQ86X29 649 aaPredicted RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 VRK2Q86Y07 508 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 CMIPQ8IY22 773 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 ATP6V1C2Q8NEY4 427 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 STARD4Q96DR4 205 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 LRMDAQ9H2I8 198 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 RAD21L1Q9H4I0 556 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 RLIMQ9NVW2 624 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 THUMPD1Q9NXG2 353 aaKnown RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 PAQR5Q9NXK6 330 aaPredicted RBP14.18□□□□□ -0.14
CLN3-201ENST00000333496 CALML5Q9NZT1 146 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 CHST2Q9Y4C5 530 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 ABCA12Q86UK0 2595 aa14.18□□□□□ -0.14
CLN3-201ENST00000333496 NOTCH2Q04721 2471 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 AP3D1O14617 1153 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 SELENBP1Q13228 472 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 PLEKHM3Q6ZWE6 761 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms