RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 GP1BBP13224 206 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 UQCRBP14927 111 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 IDH2P48735 452 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 SMSP52788 366 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 SUCLG1P53597 346 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 PSME3P61289 254 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 RAC1P63000 192 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 MERTKQ12866 999 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 INTS11Q5TA45 600 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 C8orf82Q6P1X6 216 aaPredicted RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 ERICH5Q6P6B1 374 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 CHMP1BQ7LBR1 199 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 GGNQ86UU5 652 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC15A3Q8IY34 581 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 ATP6V1C2Q8NEY4 427 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 OR2T12Q8NG77 320 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 OR10Q1Q8NGQ4 319 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 RSPO3Q9BXY4 272 aaPredicted RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 AP3M1Q9Y2T2 418 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 LRRK2Q5S007 2527 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 HEATR5AQ86XA9 2040 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 WIPF3A6NGB9 483 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 ETV2O00321 342 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 NME4O00746 187 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 TPST1O60507 370 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 GCM2O75603 506 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 EPPINO95925 133 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 PRG2P13727 222 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SFTPDP35247 375 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 CLDN15P56746 228 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 EEFSECP57772 596 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 LIPEQ05469 1076 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 DMTNQ08495 405 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 GLIPR1L2Q4G1C9 344 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 NSUN5P2Q63ZY6 315 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 DHRS4L2Q6PKH6 230 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 PLXDC2Q6UX71 529 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 PLEKHM3Q6ZWE6 761 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 ZNF550Q7Z398 422 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 PATL1Q86TB9 770 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 LACC1Q8IV20 430 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 LILRA2Q8N149 483 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SMYD1Q8NB12 490 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 RND1Q92730 232 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 PINK1Q9BXM7 581 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 GMPR2Q9P2T1 348 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC13A4Q9UKG4 626 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 M0QX08 132 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 FAAHO00519 579 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 EFNA2O43921 213 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 MFN2O95140 757 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SHC1P29353 583 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 EIF1AXP47813 144 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 RPS3AP61247 264 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 HOXC5Q00444 222 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SELENBP1Q13228 472 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 KRT72Q14CN4 511 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SEM1Q6ZVN7 128 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 GRINAQ7Z429 371 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 MRGPRGQ86SM5 289 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 COMTD1Q86VU5 262 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 MICU2Q8IYU8 434 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 CADM2Q8N3J6 435 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 BHLHE22Q8NFJ8 381 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC26A7Q8TE54 656 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 ITLN2Q8WWU7 325 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 KLHL15Q96M94 604 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 CALHM2Q9HA72 323 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 CTPS2Q9NRF8 586 aa14.31□□□□□ -0.12
CCDC28A-201ENST00000332797 BAHCC1Q9P281 2608 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 MYO7BQ6PIF6 2116 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 PHF3Q92576 2039 aaKnown RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ELOVL7A1L3X0 281 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 CD8B2A6NJW9 211 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 TNFSF11O14788 317 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ACAA2P42765 397 aaKnown RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC1A3P43003 542 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 COPZ1P61923 177 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 MXRA7P84157 204 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 VEZF1Q14119 521 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 SGCBQ16585 318 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 TMEM176BQ3YBM2 270 aaPredicted RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 PPP4R4Q6NUP7 873 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 C3orf33Q6P1S2 294 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ESPNLQ6ZVH7 1005 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 CCDC80Q76M96 950 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ADGRE4PQ86SQ3 457 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 CCDC71Q8IV32 467 aaPredicted RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ZNF808Q8N4W9 903 aaPredicted RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 TNIP2Q8NFZ5 429 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC35B4Q969S0 331 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 TAMM41Q96BW9 452 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 SDCCAG3Q96C92 435 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ZNF845Q96IR2 970 aaPredicted RBP14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 ADGRG7Q96K78 797 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 SERINC1Q9NRX5 453 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 KLHL28Q9NXS3 571 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 COQ3Q9NZJ6 369 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 CLCF1Q9UBD9 225 aa14.3□□□□□ -0.12
CCDC28A-201ENST00000332797 RNF6Q9Y252 685 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms