RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HTR2AP28223 471 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 GNPDA1P46926 289 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 DHPSP49366 369 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SULT1E1P49888 294 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 P2RY4P51582 365 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF154Q13106 437 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 RIPK1Q13546 671 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TRIP10Q15642 601 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 DEFB115Q30KQ5 88 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 RABL6Q3YEC7 729 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM41BQ5BJD5 291 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 ATAD3BQ5T9A4 648 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 OR8G2PQ6IF36 304 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SH2D6Q7Z4S9 175 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 VASH2Q86V25 355 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SERPINA9Q86WD7 417 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 UBQLNLQ8IYU4 475 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 FADS6Q8N9I5 356 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 OR10T2Q8NGX3 314 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 VSIG2Q96IQ7 327 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TESK2Q96S53 571 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TCHPQ9BT92 498 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM121Q9BTD3 319 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 ZSCAN5AQ9BUG6 496 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TSSK1BQ9BXA7 367 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 POLR1EQ9GZS1 481 aaKnown RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM117Q9H0C3 514 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 POLR3FQ9H1D9 316 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 RMND5AQ9H871 391 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 WDR76Q9H967 626 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 FANCFQ9NPI8 374 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 PNO1Q9NRX1 252 aaKnown RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 FARSBQ9NSD9 589 aaKnown RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SMPD3Q9NY59 655 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 COX16Q9P0S2 106 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 CHRNA9Q9UGM1 479 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 B9D1Q9UPM9 204 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SAMD4AQ9UPU9 718 aaKnown RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 PDE10AQ9Y233 779 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 ASB3Q9Y575 518 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 LRPPRCP42704 1394 aaKnown RBP2.45□□□□□ -2.02
HMGB1-201ENST00000326004 NWD2Q9ULI1 1742 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 THSD7AQ9UPZ6 1657 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 GTF3C1Q12789 2109 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PIK3C2BO00750 1634 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PREX2Q70Z35 1606 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SAGE2PA6NJ88 616 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 A8MU10 97 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 AP3B1O00203 1094 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CLDN5O00501 218 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CXCL11O14625 94 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 HAT1O14929 419 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 XPO1O14980 1071 aaKnown RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 MAPK13O15264 365 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 DUX1O43812 170 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 JAK2O60674 1132 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CABYRO75952 493 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 LY6G6DO95868 133 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PGK1P00558 417 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CHRNA1P02708 482 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 HBQ1P09105 142 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 P0C879 139 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 ATP5A1P25705 553 aaKnown RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 RGRP47804 291 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 UBE2HP62256 183 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 NTHL1P78549 312 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 IL24Q13007 206 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 DPYSL3Q14195 570 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PRR4Q16378 134 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 RNF212Q495C1 297 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SLC36A3Q495N2 470 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 LINC01620Q4KN68 170 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SBK1Q52WX2 424 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 BOLA3Q53S33 107 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CFAP157Q5JU67 520 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SPATA46Q5T0L3 261 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CCDC183Q5T5S1 534 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 NCR3LG1Q68D85 454 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PVRIGQ6DKI7 326 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 OR5M10Q6IEU7 315 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CBLN3Q6UW01 205 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 ERASQ7Z444 233 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 ZDHHC21Q8IVQ6 265 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 CENPLQ8N0S6 344 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 ZCCHC7Q8N3Z6 543 aaKnown RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 C11orf42Q8N5U0 333 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 OR9A4Q8NGU2 314 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 BADQ92934 168 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 DHTKD1Q96HY7 919 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 AKR1E2Q96JD6 320 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 TTC25Q96NG3 672 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 UTP6Q9NYH9 597 aaKnown RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 MRPL39Q9NYK5 338 aaKnown RBP2.44□□□□□ -2.02
HMGB1-201ENST00000326004 MOKQ9UQ07 419 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SMC3Q9UQE7 1217 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 SPACA6W5XKT8 324 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 KIF15Q9NS87 1388 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 PLEKHG1Q9ULL1 1385 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 ADGRL2O95490 1459 aa2.44□□□□□ -2.02
HMGB1-201ENST00000326004 TRPM2O94759 1503 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms