RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KCNU1A8MYU2 1149 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MYL12BO14950 172 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GPR32O75388 356 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CD5P06127 495 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MYL12AP19105 171 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 DPP4P27487 766 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 AOAHP28039 575 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 IRF8Q02556 426 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF844Q08AG5 666 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SHISA2Q6UWI4 295 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 RNF111Q6ZNA4 994 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF621Q6ZSS3 439 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TSPAN33Q86UF1 283 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PI4KAP1Q8N8J0 262 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR1L6Q8NGR2 347 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR2T3Q8NH03 318 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MRGPRDQ8TDS7 321 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ASB8Q9H765 288 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SMOXQ9NWM0 555 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 LCTP09848 1927 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 BBIP1A8MTZ0 92 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 BCAT2O15382 392 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SEMA4FO95754 770 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 C21orf33P30042 268 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SDC4P31431 198 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 RGS1Q08116 209 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SELPLGQ14242 412 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 HENMT1Q5T8I9 393 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NT5DC1Q5TFE4 455 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SUSD4Q5VX71 490 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 Q71RC1 249 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TGIF2LYQ8IUE0 185 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR8I2Q8N0Y5 310 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR56A1Q8NGH5 318 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NOL4LQ96MY1 436 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 IL17FQ96PD4 163 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GDF3Q9NR23 364 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NLKQ9UBE8 527 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SCP2D1Q9UJQ7 156 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PUS1Q9Y606 427 aaKnown RBP eCLIP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 HIVEP2P31629 2446 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CA12O43570 354 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GIPP09681 153 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CCL2P13500 99 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GABRA2P47869 451 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GAB1Q13480 694 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TTLL4Q14679 1199 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SERINC5Q86VE9 423 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 RPLP0P6Q8NHW5 317 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 DGAT2Q96PD7 388 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 DERL2Q9GZP9 239 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GSX1Q9H4S2 264 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CUTCQ9NTM9 273 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ARMCX1Q9P291 453 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 COLQQ9Y215 455 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PLEKHM1Q9Y4G2 1056 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 COX11Q9Y6N1 276 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MN1Q10571 1320 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SBF1O95248 1867 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TRAV26-1A0A087WT03 109 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 A0A0G2JMP0 313 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TRBV7-9A0A0J9YWB2 115 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ATP6AP2A0A1C7CYW4 349 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ELOVL7A1L3X0 281 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MRPS14O60783 128 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TCRBP04435 133 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF37AP17032 561 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GNRHRP30968 328 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 NTSR1P30989 418 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 KLK7P49862 253 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GRAPQ13588 217 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MANEALQ5VSG8 457 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CST9LP1Q5W188 147 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 UGT2A3Q6UWM9 527 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 HSD17B11Q8NBQ5 300 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR4M2Q8NGB6 313 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 FUCA2Q9BTY2 467 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 DPH1Q9BZG8 443 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MRM2Q9UI43 246 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CDH22Q9UJ99 828 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ITGB1BP1O14713 200 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 HSD17B6O14756 317 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 GCAP28676 217 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR1D2P34982 312 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 RBM39Q14498 530 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF367Q7RTV3 350 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SAMD7Q7Z3H4 446 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CLNKQ7Z7G1 428 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 MMP21Q8N119 569 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 OR5D13Q8NGL4 314 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 POM121L2Q96KW2 1035 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SLC46A1Q96NT5 459 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 STACQ99469 402 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TREM2Q9NZC2 230 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM216Q9P0N5 145 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 FAM87AP0C7U9 286 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 CHATP28329 748 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 PTGFRP43088 359 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 EEFSECP57772 596 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 WIPI1Q5MNZ9 446 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms