RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PFN4Q8NHR9 129 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 TMEM239Q8WW34 195 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 APH1BQ8WW43 257 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 DEFB126Q9BYW3 111 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 SPRY4Q9C004 299 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 LAT2Q9GZY6 243 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 DSN1Q9H410 356 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ZBTB20Q9HC78 741 aaPredicted RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 RASSF1Q9NS23 344 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 PCDHGA3Q9Y5H0 932 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 NPFFR2Q9Y5X5 522 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 HS3ST3B1Q9Y662 390 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 CNOT1A5YKK6 2376 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 IGHV1-45A0A0A0MS14 117 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 A0A1W2PQD3 144 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 TRIM64CA6NLI5 447 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 ALG1L2C9J202 215 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 KPNA4O00629 521 aaPredicted RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 SOCS6O14544 535 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 KLF4O43474 513 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 SCO2O43819 266 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 FADS1O60427 444 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 FAM20BO75063 409 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 WBP4O75554 376 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 TFAP2AP05549 437 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 CD63P08962 238 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 RAB40ALP0C0E4 278 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 LINGO3P0C6S8 592 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 FTH1P19P0C7X4 201 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 IFI30P13284 250 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 CRHBPP24387 322 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 EEF1B2P24534 225 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 FPR3P25089 353 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 OTX2P32243 289 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 EVI2BP34910 448 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 STAT5AP42229 794 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 FBXW4P57775 412 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 GABARAPL2P60520 117 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 CDC42P60953 191 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 COPZ1P61923 177 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 PRKCDQ05655 676 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 GINS1Q14691 196 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 SMN1Q16637 294 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 BTBD16Q32M84 506 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 ALG10BQ5I7T1 473 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 C12orf73Q69YU5 71 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 CBLN3Q6UW01 205 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 PPP1R32Q7Z5V6 425 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 RNF113BQ8IZP6 322 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 DEPDC4Q8N2C3 294 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 IQCF1Q8N6M8 205 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 LSMEM1Q8N8F7 131 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 BPIFB6Q8NFQ5 453 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 OR5M3Q8NGP4 307 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 ELP5Q8TE02 316 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 SGCDQ92629 289 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 ZNF566Q969W8 418 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 SH3YL1Q96HL8 342 aaPredicted RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 IMMP1LQ96LU5 166 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 HS6ST2Q96MM7 605 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 NODALQ96S42 347 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 TBL1XR1Q9BZK7 514 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 PLA2G12AQ9BZM1 189 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 RTN4RQ9BZR6 473 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 EGLN3Q9H6Z9 239 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 KRCC1Q9NPI7 259 aaPredicted RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 EXOSC3Q9NQT5 275 aaKnown RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 IMPAD1Q9NX62 359 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 TUBA8Q9NY65 449 aaPredicted RBP9.63□□□□□ -0.87
SS18-217ENST00000580958 SELENONQ9NZV5 590 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 BLOC1S6Q9UL45 172 aa9.63□□□□□ -0.87
SS18-217ENST00000580958 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.62□□□□□ -0.87
SS18-217ENST00000580958 UNC119BA6NIH7 251 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 C17orf51A8MQB3 221 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 GNB5O14775 395 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 NDUFB5O43674 189 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 XPNPEP2O43895 674 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 FOXD2O60548 495 aaPredicted RBP9.62□□□□□ -0.87
SS18-217ENST00000580958 EIF4E2O60573 245 aaKnown RBP9.62□□□□□ -0.87
SS18-217ENST00000580958 DKK1O94907 266 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 OR6B1O95007 311 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 TNFSF15O95150 251 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 CCDC159P0C7I6 412 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 CDK4P11802 303 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 GABRB1P18505 474 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 MAKP20794 623 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 RPL5P46777 297 aaKnown RBP9.62□□□□□ -0.87
SS18-217ENST00000580958 TUBA4AP68366 448 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 ZNF117Q03924 483 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 PIGFQ07326 219 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 DNASE1L3Q13609 305 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 TMEM164Q5U3C3 297 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 BROXQ5VW32 411 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 WBP2NLQ6ICG8 309 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 ULK3Q6PHR2 472 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 ZNF773Q6PK81 442 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 LYPD8Q6UX82 237 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 RASSF6Q6ZTQ3 369 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 NDUFAF7Q7L592 441 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 MARCH9Q86YJ5 346 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms