RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FLRT3Q9NZU0 649 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 KLHL9Q9P2J3 617 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 PCDHB10Q9UN67 800 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 PKD1L1Q8TDX9 2849 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 TMPRSS2O15393 492 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 ULK1O75385 1050 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 ERLIN1O75477 346 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 RAD51DO75771 328 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 SUPT7LO94864 414 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 KCNH1O95259 989 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 UTS2O95399 124 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 PROCP04070 461 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 ERCC1P07992 297 aaPredicted RBP9.75□□□□□ -0.85
VPS53-207ENST00000570510 CPA3P15088 417 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 HPGDP15428 266 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 OR3A2P47893 321 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 UNC50Q53HI1 259 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 LIPMQ5VYY2 423 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 GALNT18Q6P9A2 607 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 SHISA2Q6UWI4 295 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 GPRIN3Q6ZVF9 776 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 FAM9CQ8IZT9 166 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 METTL4Q8N3J2 472 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 SEMA6DQ8NFY4 1073 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 OR4F6Q8NGB9 312 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 HPS1Q92902 700 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 TM4SF18Q96CE8 201 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 ZNF681Q96N22 645 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 CDK15Q96Q40 435 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 BBS4Q96RK4 519 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 C1QTNF6Q9BXI9 259 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 RTN4RQ9BZR6 473 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 OXSMQ9NWU1 459 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 TBK1Q9UHD2 729 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 PRSS50Q9UI38 385 aa9.75□□□□□ -0.85
VPS53-207ENST00000570510 GOLGA8QA0A0J9YX86 632 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 A0A1W2PRB8 838 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 GOLGA8OA6NCC3 632 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 C9JVG2 144 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 GOLGA8NF8WBI6 632 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 G3V2L1 256 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 GOLGA8RI6L899 631 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 PLOD3O60568 738 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 NUDT14O95848 222 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SLC7A1P30825 629 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 EIF1P41567 113 aaKnown RBP9.74□□□□□ -0.85
VPS53-207ENST00000570510 LIMS1P48059 325 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 PHC1P78364 1004 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 PRR5P85299 388 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 PSG6Q00889 435 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SPIN4Q56A73 249 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 AWAT1Q58HT5 328 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 CFAP157Q5JU67 520 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 LRIG3Q6UXM1 1119 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 TREML4Q6UXN2 200 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 B3GLCTQ6Y288 498 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 FRMD7Q6ZUT3 714 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 TRIM46Q7Z4K8 759 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 GSPT2Q8IYD1 628 aaKnown RBP9.74□□□□□ -0.85
VPS53-207ENST00000570510 ATP6V1C2Q8NEY4 427 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SELENOMQ8WWX9 145 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 ZNF775Q96BV0 537 aaPredicted RBP9.74□□□□□ -0.85
VPS53-207ENST00000570510 SH3YL1Q96HL8 342 aaPredicted RBP9.74□□□□□ -0.85
VPS53-207ENST00000570510 APOPT1Q96IL0 206 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SORCS2Q96PQ0 1159 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 TMEM237Q96Q45 408 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SNX18Q96RF0 628 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 SOX7Q9BT81 388 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 MED17Q9NVC6 651 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 VPS29Q9UBQ0 182 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 ZNF281Q9Y2X9 895 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 PCDHGB1Q9Y5G3 927 aa9.74□□□□□ -0.85
VPS53-207ENST00000570510 IGLV3-32A0A0A0MS00 114 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 GNG14A0A1W2PPG7 69 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 A0A1W2PPM1 405 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 A0A1W2PR80 420 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 TRIM13O60858 407 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 SLITRK5O94991 958 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 FGF4P08620 206 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 IGHV1-2P23083 117 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 HMOX2P30519 316 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 MANFP55145 182 aaKnown RBP9.73□□□□□ -0.85
VPS53-207ENST00000570510 RASGEF1BQ0VAM2 473 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 HEPACAMQ14CZ8 416 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 PLPPR5Q32ZL2 321 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 TMEM176BQ3YBM2 270 aaPredicted RBP9.73□□□□□ -0.85
VPS53-207ENST00000570510 LETMD1Q6P1Q0 360 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 GLCCI1Q86VQ1 547 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 LRRC17Q8N6Y2 441 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 ANKS4BQ8N8V4 417 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 GATSQ8NAP1 163 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 OR7G2Q8NG99 324 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 METTL6Q8TCB7 284 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 ACTRT2Q8TDY3 377 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 EPS8L3Q8TE67 593 aaKnown RBP9.73□□□□□ -0.85
VPS53-207ENST00000570510 NSUN5Q96P11 429 aaKnown RBP9.73□□□□□ -0.85
VPS53-207ENST00000570510 ZIM3Q96PE6 472 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 KCNS3Q9BQ31 491 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 SRXN1Q9BYN0 137 aa9.73□□□□□ -0.85
VPS53-207ENST00000570510 RAB1BQ9H0U4 201 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms