RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 BMP7P18075 431 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 NDUFS1P28331 727 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 ACSL1P33121 698 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 THBS2P35442 1172 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 PBX2P40425 430 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 RPS15AP62244 130 aaKnown RBP11.93□□□□□ -0.5
LDLR-207ENST00000558013 GPR18Q14330 331 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 YIF1BQ5BJH7 314 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 FHL5Q5TD97 284 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 CEACAM19Q7Z692 300 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 GPR135Q8IZ08 494 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 OR4D9Q8NGE8 314 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 FAM3CQ92520 227 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 GDE1Q9NZC3 331 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 SLC22A7Q9Y694 548 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 MAU2Q9Y6X3 613 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 A0A1W2PRG6 482 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 HRKO00198 91 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 EEF1E1O43324 174 aaKnown RBP11.93□□□□□ -0.5
LDLR-207ENST00000558013 HCN1O60741 890 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 YES1P07947 543 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 ARSBP15848 533 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 PYCR1P32322 319 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 GPR176Q14439 515 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 NNATQ16517 81 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 FIGLAQ6QHK4 219 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 KRT74Q7RTS7 529 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 DUSP18Q8NEJ0 188 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 MED17Q9NVC6 651 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 ASB6Q9NWX5 421 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 FLRT3Q9NZU0 649 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 SIGLEC7Q9Y286 467 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 PCDHGB7Q9Y5F8 929 aa11.93□□□□□ -0.5
LDLR-207ENST00000558013 TRAV6A0A075B6T7 132 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 A0A1W2PQF6 199 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 H0YGG7 62 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 B3GALT2O43825 422 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 STX11O75558 287 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 SYPP08247 313 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 NID1P14543 1247 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 TSFMP43897 325 aaKnown RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 ARF3P61204 181 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 ACSM1Q08AH1 577 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 FAPQ12884 760 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 DEFB110Q30KQ9 67 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 NDUFAF6Q330K2 333 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 C9orf50Q5SZB4 431 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 RANBP3LQ86VV4 465 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 OR52L1Q8NGH7 329 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 OR5H6Q8NGV6 325 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 BRIX1Q8TDN6 353 aaKnown RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 TM4SF19Q96DZ7 209 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 BMFQ96LC9 184 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 FN3KQ9H479 309 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 PIGUQ9H490 435 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 NTMQ9P121 344 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 POLHQ9Y253 713 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 MRPS7Q9Y2R9 242 aaKnown RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 PRR23D1E9PI22 279 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 CDC123O75794 336 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 PRR23D2P0DMB1 279 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 SMIM10L1P0DMW3 83 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 ZNF85Q03923 595 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 SUZ12Q15022 739 aaKnown RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 LYPD4Q6UWN0 246 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 USP53Q70EK8 1073 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 NANOGNBQ7Z5D8 188 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 ZNF619Q8N2I2 560 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 LNX2Q8N448 690 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 LRRC17Q8N6Y2 441 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 ZNRF4Q8WWF5 429 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 SMIM10Q96HG1 83 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 ORAI3Q9BRQ5 295 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 THAP7Q9BT49 309 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 TCEAL2Q9H3H9 227 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 SFXN1Q9H9B4 322 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 RPRD1BQ9NQG5 326 aaKnown RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 PILRAQ9UKJ1 303 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 C19orf53Q9UNZ5 99 aaPredicted RBP11.92□□□□□ -0.5
LDLR-207ENST00000558013 CACNA1CQ13936 2221 aa11.92□□□□□ -0.5
LDLR-207ENST00000558013 A0A087WV48 116 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SGK494L7N484 410 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ERVH48-1M5A8F1 160 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 PRKCAP17252 672 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 HLA-DMAP28067 261 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 MAGEB1P43366 347 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 EMDP50402 254 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CLDN20P56880 219 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 GPLD1P80108 840 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 GALEQ14376 348 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 TP53I3Q53FA7 332 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ABHD4Q8TB40 342 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 HERVK_113Q902F9 699 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 HSD17B8Q92506 261 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ZMYND19Q96E35 227 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 SERINC2Q96SA4 455 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 GAS2L1Q99501 681 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 ZNF559Q9BR84 538 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 MARVELD1Q9BSK0 173 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 RMI1Q9H9A7 625 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms