RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TVP23BQ9NYZ1 205 aa12.35□□□□□ -0.43
PTCH1-215ENST00000547672 RSL24D1Q9UHA3 163 aaKnown RBP12.35□□□□□ -0.43
PTCH1-215ENST00000547672 LOXL2Q9Y4K0 774 aa12.35□□□□□ -0.43
PTCH1-215ENST00000547672 PCDHGA3Q9Y5H0 932 aa12.35□□□□□ -0.43
PTCH1-215ENST00000547672 RALGAPA1Q6GYQ0 2036 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 A0A087WUJ7 227 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CCDC187A0A096LP49 1063 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 FAM86C2PA6NEL3 165 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ELOA3DA6NLF2 546 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF99A8MXY4 864 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 XPNPEP2O43895 674 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CBFA2T3O75081 653 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 LYPD3O95274 346 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 SOX14O95416 240 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CDK1P06493 297 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CCL4P13236 92 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 MSX1P28360 303 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 GRK5P34947 590 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 SLC1A3P43003 542 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 HTR3AP46098 478 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 TMBIM6P55061 237 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 SUMO3P55854 103 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 C17orf67Q0P5P2 114 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CBFBQ13951 182 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 NEDD8Q15843 81 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ISXQ2M1V0 245 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ELOA3BQ3SY89 546 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 FNDC7Q5VTL7 733 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CDCP2Q5VXM1 449 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 LAIR2Q6ISS4 152 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 C5orf46Q6UWT4 87 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 B3GNT6Q6ZMB0 384 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF517Q6ZMY9 492 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF620Q6ZNG0 422 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 SHISA6Q6ZSJ9 500 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CCDC71Q8IV32 467 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ELOA3Q8NG57 546 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF563Q8TA94 476 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 TMEM234Q8WY98 164 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 TSC22D3Q99576 134 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 TMEM43Q9BTV4 400 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF426Q9BUY5 554 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF700Q9H0M5 742 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 C11orf16Q9NQ32 467 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 WDR70Q9NW82 654 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 CHCHD3Q9NX63 227 aaKnown RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 NCDNQ9UBB6 729 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ZNF223Q9UK11 482 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 ICAM5Q9UMF0 924 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 PTRH2Q9Y3E5 179 aaKnown RBP12.34□□□□□ -0.43
PTCH1-215ENST00000547672 MUC3AQ02505 3323 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 BDP1A6H8Y1 2624 aa12.34□□□□□ -0.43
PTCH1-215ENST00000547672 TRBV11-1A0A0K0K1C0 115 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TNFRSF10AO00220 468 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TLX2O43763 284 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 BCAS1O75363 584 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SEC14L2O76054 403 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 THY1P04216 161 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SAGP10523 405 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 GP1BBP13224 206 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SLC6A6P31641 620 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 MAP2K6P52564 334 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 RPS15P62841 145 aaKnown RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 EMX1Q04741 257 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SKP2Q13309 424 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 PMS2P3Q13401 168 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TMED1Q13445 227 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 RAB39AQ14964 217 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SF3A2Q15428 464 aaKnown RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 RNLSQ5VYX0 342 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TMEM236Q5W0B7 351 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SMARCD3Q6STE5 483 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-215ENST00000547672 AHSA2Q719I0 299 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 OAFQ86UD1 273 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 CACTIN-AS1Q8N1I8 211 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TMCO5AQ8N6Q1 288 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TCEANCQ8N8B7 351 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SUMF1Q8NBK3 374 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 APCDD1LQ8NCL9 501 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 OR5W2Q8NH69 310 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 TMEM163Q8TC26 289 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 GRHL3Q8TE85 626 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 APH1BQ8WW43 257 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 GGHQ92820 318 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 SGTBQ96EQ0 304 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 FN3KQ9H479 309 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 FKBP14Q9NWM8 211 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 FLRT3Q9NZU0 649 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 CNIH4Q9P003 139 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 ERVK-18Q9QC07 812 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 NTNG1Q9Y2I2 539 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 CEPT1Q9Y6K0 416 aa12.33□□□□□ -0.44
PTCH1-215ENST00000547672 ASCC3Q8N3C0 2202 aaKnown RBP12.32□□□□□ -0.44
PTCH1-215ENST00000547672 H3BSA7 217 aa12.32□□□□□ -0.44
PTCH1-215ENST00000547672 TP53I11O14683 189 aa12.32□□□□□ -0.44
PTCH1-215ENST00000547672 HCRTR2O43614 444 aa12.32□□□□□ -0.44
PTCH1-215ENST00000547672 IDH3BO43837 385 aa12.32□□□□□ -0.44
PTCH1-215ENST00000547672 FADS1O60427 444 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms