RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 DCAF13Q9NV06 445 aaKnown RBP18.23■□□□□ 0.51
USP53-203ENST00000507597 VDAC3Q9Y277 283 aa18.23■□□□□ 0.51
USP53-203ENST00000507597 SPIN1Q9Y657 262 aaPredicted RBP18.23■□□□□ 0.51
USP53-203ENST00000507597 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 OR14I1A6ND48 311 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 ARPC2O15144 300 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 FMO6PO60774 539 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 CIB2O75838 187 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 APOBEC1P41238 236 aaKnown RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 IDH2P48735 452 aaKnown RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 RNF144AP50876 292 aaPredicted RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 MAP2K6P52564 334 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 KCNC4Q03721 635 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 C19orf57Q0VDD7 668 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 QPRTQ15274 297 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 SF3B4Q15427 424 aaKnown RBP eCLIP18.22■□□□□ 0.51
USP53-203ENST00000507597 ZSCAN26Q16670 478 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 IFI44LQ53G44 452 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 SOWAHCQ53LP3 525 aaPredicted RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 CMPK2Q5EBM0 449 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 RNFT1Q5M7Z0 435 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 PGM2L1Q6PCE3 622 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 TRILQ7L0X0 811 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 YRDCQ86U90 279 aaKnown RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 ULK2Q8IYT8 1036 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 GEMIN6Q8WXD5 167 aaKnown RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 CCDC124Q96CT7 223 aaKnown RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 BBC3Q96PG8 261 aaPredicted RBP18.22■□□□□ 0.51
USP53-203ENST00000507597 PCDHAC1Q9H158 963 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 ACER3Q9NUN7 267 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 SH3GLB1Q9Y371 365 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 NINQ8N4C6 2090 aa18.22■□□□□ 0.51
USP53-203ENST00000507597 A0A1B0GVC2 190 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 GJE1A6NN92 205 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 AQP7O14520 342 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 TPST1O60507 370 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 CD247P20963 164 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 SLC1A3P43003 542 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 MLLT10P55197 1068 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 NRF1Q16656 503 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 PLPPR5Q32ZL2 321 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 NDUFAF6Q330K2 333 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 SLC25A53Q5H9E4 307 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 WIPI1Q5MNZ9 446 aaPredicted RBP18.21■□□□□ 0.51
USP53-203ENST00000507597 GFRALQ6UXV0 394 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 PRICKLE2Q7Z3G6 844 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 GRINAQ7Z429 371 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 GTPBP8Q8N3Z3 284 aaPredicted RBP18.21■□□□□ 0.51
USP53-203ENST00000507597 RAB3IPQ96QF0 476 aaPredicted RBP18.21■□□□□ 0.51
USP53-203ENST00000507597 ARHGDIGQ99819 225 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 SLX1AQ9BQ83 275 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 UGT2B28Q9BY64 529 aa18.21■□□□□ 0.51
USP53-203ENST00000507597 GMPR2Q9P2T1 348 aaKnown RBP18.21■□□□□ 0.51
USP53-203ENST00000507597 RPH3AQ9Y2J0 694 aaPredicted RBP18.21■□□□□ 0.51
USP53-203ENST00000507597 ATMQ13315 3056 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 BCKDKO14874 412 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ZIC3O60481 467 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 IFNW1P05000 195 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 GKN3PP0CG01 181 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 PEPDP12955 493 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ITGA2P17301 1181 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ELK4P28324 431 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 MSX2P35548 267 aaPredicted RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 SESN3P58005 492 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 NHSL2Q5HYW2 709 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 COLEC12Q5KU26 742 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 LCN8Q6JVE9 175 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ARSKQ6UWY0 536 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ASRGL1Q7L266 308 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 CYP4Z1Q86W10 505 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ATCAYQ86WG3 371 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 PM20D2Q8IYS1 436 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 LSMEM1Q8N8F7 131 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 ST6GALNAC3Q8NDV1 305 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 DNAJA4Q8WW22 397 aaPredicted RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 ABTB1Q969K4 478 aaPredicted RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 PYURFQ96I23 114 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 CLPTM1LQ96KA5 538 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 TSPAN10Q9H1Z9 355 aaPredicted RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 PLSCR2Q9NRY7 297 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 RALYQ9UKM9 306 aaKnown RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 NTNG1Q9Y2I2 539 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 FAM32AQ9Y421 112 aaKnown RBP18.2■□□□□ 0.5
USP53-203ENST00000507597 AP4B1Q9Y6B7 739 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 CHD6Q8TD26 2715 aa18.2■□□□□ 0.5
USP53-203ENST00000507597 AQP12BA6NM10 295 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 OIP5O43482 229 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 PRKCAP17252 672 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 MST1P26927 711 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 PTGS2P35354 604 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 ACAA2P42765 397 aaKnown RBP18.19■□□□□ 0.5
USP53-203ENST00000507597 POLR2HP52434 150 aaKnown RBP18.19■□□□□ 0.5
USP53-203ENST00000507597 CASP6P55212 293 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 FLOT2Q14254 428 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 BCL2A1Q16548 175 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 GLIPR1L2Q4G1C9 344 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 PDSS1Q5T2R2 415 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 WLSQ5T9L3 541 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 CARM1Q86X55 608 aa18.19■□□□□ 0.5
USP53-203ENST00000507597 SPPL2CQ8IUH8 684 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms