RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARHGAP9Q9BRR9 750 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 ZBTB20Q9HC78 741 aaPredicted RBP9.91□□□□□ -0.82
USP4-214ENST00000491791 CTPS2Q9NRF8 586 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 INPP5EQ9NRR6 644 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 CHCHD3Q9NX63 227 aaKnown RBP9.91□□□□□ -0.82
USP4-214ENST00000491791 ETAA1Q9NY74 926 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 HAO2Q9NYQ3 351 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 SERTAD3Q9UJW9 196 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 CBLCQ9ULV8 474 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 SIGLEC7Q9Y286 467 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 SF3B6Q9Y3B4 125 aaKnown RBP9.91□□□□□ -0.82
USP4-214ENST00000491791 MED31Q9Y3C7 131 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 RNF215Q9Y6U7 377 aa9.91□□□□□ -0.82
USP4-214ENST00000491791 SPAG17Q6Q759 2223 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 J3QRK9 145 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 HCN1O60741 890 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 IL1AP01583 271 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 GIMD1P0DJR0 217 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 GLB1P16278 677 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 CD53P19397 219 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 MAKP20794 623 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SOX6P35712 828 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 ETV5P41161 510 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 PPICP45877 212 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 GPR4P46093 362 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SLC9A3P48764 834 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 ETV1P50549 477 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 AFF3P51826 1226 aaKnown RBP9.9□□□□□ -0.82
USP4-214ENST00000491791 HSD11B2P80365 405 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 HOXC5Q00444 222 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 FHL1Q13642 323 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 DSG2Q14126 1118 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SF3A2Q15428 464 aaKnown RBP9.9□□□□□ -0.82
USP4-214ENST00000491791 INAQ16352 499 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 KLHL26Q53HC5 615 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 STPG1Q5TH74 334 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 FNDC7Q5VTL7 733 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 PLXDC1Q8IUK5 500 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 EGFL6Q8IUX8 553 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 C16orf52Q8NHV5 167 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 LIPHQ8WWY8 451 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 BPIFA2Q96DR5 249 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 ZC3H10Q96K80 434 aaKnown RBP9.9□□□□□ -0.82
USP4-214ENST00000491791 SAMD8Q96LT4 415 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 HSPA12BQ96MM6 686 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SLC46A1Q96NT5 459 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 CHCHD6Q9BRQ6 235 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SLC19A3Q9BZV2 496 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 OR10A5Q9H207 317 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 OR52D1Q9H346 318 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 C12orf10Q9HB07 376 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 EXOSC3Q9NQT5 275 aaKnown RBP9.9□□□□□ -0.82
USP4-214ENST00000491791 CMC2Q9NRP2 79 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 FLRT3Q9NZU0 649 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 HCN3Q9P1Z3 774 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 SLC35A3Q9Y2D2 325 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 CEP295Q9C0D2 2601 aa9.9□□□□□ -0.82
USP4-214ENST00000491791 THADAQ6YHU6 1953 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 PNMA8CA0A1B0GUJ8 204 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 IQCMA0A1B0GVH7 501 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 A0A1B0GWA3 101 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SERINC4A6NH21 518 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 RHPN2P1A8MT19 583 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 POLR1CO15160 346 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 BCAT2O15382 392 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 HYAL3O43820 417 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 PIP5K1CO60331 668 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 IL33O95760 270 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 IGKV3-11P04433 115 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 GKN3PP0CG01 181 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 HSMCR30P0CW71 290 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 CKMT1AP12532 417 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 IFI30P13284 250 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 BMP7P18075 431 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SSTR4P31391 388 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 MPLP40238 635 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 CDH11P55287 796 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 GFERP55789 205 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 DCAF7P61962 342 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 BTG2P78543 158 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 ZNF267Q14586 743 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 ZNF181Q2M3W8 571 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 DEFB133Q30KQ1 61 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 ZNF362Q5T0B9 420 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 PDZK1Q5T2W1 519 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SLC30A6Q6NXT4 461 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SMARCD3Q6STE5 483 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 RTL4Q6ZR62 310 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 MEPCEQ7L2J0 689 aaKnown RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 BCDIN3DQ7Z5W3 292 aaKnown RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 CCDC190Q86UF4 302 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 C11orf74Q86VG3 221 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 LAPTM4BQ86VI4 370 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 CENPSQ8N2Z9 138 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SLC25A45Q8N413 288 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 BCORP1Q8N888 145 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 OR52L1Q8NGH7 329 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 B4GALNT2Q8NHY0 566 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 PTPMT1Q8WUK0 201 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 DNAJA4Q8WW22 397 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms