RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ATMQ13315 3056 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 DHRS12A0PJE2 317 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 ACOT7O00154 380 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TPST2O60704 377 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TRAPPC6AO75865 159 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 IFNW1P05000 195 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 GPIP06744 558 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 UQCRBP14927 111 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 HK1P19367 917 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TCEA1P23193 301 aaKnown RBP11.12□□□□□ -0.63
SDC1-206ENST00000482879 GDF1P27539 372 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 IDH2P48735 452 aaKnown RBP11.12□□□□□ -0.63
SDC1-206ENST00000482879 ZNF41P51814 821 aaPredicted RBP11.12□□□□□ -0.63
SDC1-206ENST00000482879 DSCR4P56555 118 aaPredicted RBP11.12□□□□□ -0.63
SDC1-206ENST00000482879 ACTR3P61158 418 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 COPZ1P61923 177 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 KLRB1Q12918 225 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 QPRTQ15274 297 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TOMM34Q15785 309 aaPredicted RBP11.12□□□□□ -0.63
SDC1-206ENST00000482879 NPTX1Q15818 432 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 HYAL4Q2M3T9 481 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 COLEC12Q5KU26 742 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 RNFT1Q5M7Z0 435 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 ARSKQ6UWY0 536 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 DEF8Q6ZN54 512 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 ADGRG5Q8IZF4 528 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TMEM251Q8N6I4 163 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 CANT1Q8WVQ1 401 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 C1GALT1C1Q96EU7 318 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 ZNF559Q9BR84 538 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 AMBRA1Q9C0C7 1298 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 MAGIXQ9H6Y5 334 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TMEM27Q9HBJ8 222 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 MED17Q9NVC6 651 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 TAS2R10Q9NYW0 307 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 DKKL1Q9UK85 242 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 VDAC3Q9Y277 283 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 NTNG1Q9Y2I2 539 aa11.12□□□□□ -0.63
SDC1-206ENST00000482879 ZGRF1Q86YA3 2104 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 A0A087WZY1 265 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 hCG_2039718K7EN88 272 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 FAAHO00519 579 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 TFECO14948 347 aaPredicted RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 SEMG1P04279 462 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 RAP2AP10114 183 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 GP1BBP13224 206 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 PSMA4P25789 261 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 HTR2AP28223 471 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 SRD5A2P31213 254 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 MAGEA5P43359 124 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 YAP1P46937 504 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 SESN3P58005 492 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 GANABQ14697 944 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 SLC10A1Q14973 349 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 OR1Q1Q15612 314 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 INAQ16352 499 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 ZDHHC21Q8IVQ6 265 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 C10orf67Q8IYJ2 551 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 CADM2Q8N3J6 435 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 TMEM234Q8WY98 164 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 ZNF524Q96C55 264 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 C7orf34Q96L11 122 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 TAAR6Q96RI8 345 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 UBL7Q96S82 380 aaPredicted RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 TRIM2Q9C040 744 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 UBQLN3Q9H347 655 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 ZNF703Q9H7S9 590 aaPredicted RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 IL1RAPQ9NPH3 570 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 CTPS2Q9NRF8 586 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 ACER3Q9NUN7 267 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 RPS6KB2Q9UBS0 482 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 TESQ9UGI8 421 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 PRDM4Q9UKN5 801 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 MRPS18CQ9Y3D5 142 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 FAM32AQ9Y421 112 aaKnown RBP11.11□□□□□ -0.63
SDC1-206ENST00000482879 ENPP4Q9Y6X5 453 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 ITPR1Q14643 2758 aa11.11□□□□□ -0.63
SDC1-206ENST00000482879 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 CPSF4LA6NMK7 179 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 ZIC3O60481 467 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 FMO6PO60774 539 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 CRYABP02511 175 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 MT-ND1P03886 318 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 FABP3P05413 133 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ZNF24P17028 368 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 PRKCAP17252 672 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ITGA2P17301 1181 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 HOXB6P17509 224 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 VLDLRP98155 873 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ALDH6A1Q02252 535 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 PLPPR5Q32ZL2 321 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ENTPD8Q5MY95 495 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 WBP2NLQ6ICG8 309 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 PLEKHM3Q6ZWE6 761 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 TSEN54Q7Z6J9 526 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 YRDCQ86U90 279 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 CYP4Z1Q86W10 505 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 FAM109AQ8N4B1 249 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 CISD2Q8N5K1 135 aaKnown RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 Q8NA96 180 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms