RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 NID1P14543 1247 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 GNSP15586 552 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 GLB1P16278 677 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 GPR3P46089 330 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 ARL4DP49703 201 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 WNT4P56705 351 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 CT45A2Q5DJT8 189 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 LYSMD4Q5XG99 296 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 SLC27A4Q6P1M0 643 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 CLDN22Q8N7P3 220 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 CELF2-AS1Q8N7Q2 184 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 GATSQ8NAP1 163 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 PRRG3Q9BZD7 231 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 SYNDIG1Q9H7V2 258 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 MOV10Q9HCE1 1003 aaKnown RBP13.34□□□□□ -0.27
CHD3-211ENST00000481999 FGF20Q9NP95 211 aaPredicted RBP13.34□□□□□ -0.27
CHD3-211ENST00000481999 TXNL4BQ9NX01 149 aaKnown RBP13.34□□□□□ -0.27
CHD3-211ENST00000481999 TBC1D24Q9ULP9 559 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 CMAHPQ9Y471 501 aa13.34□□□□□ -0.27
CHD3-211ENST00000481999 ALPK2Q86TB3 2170 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 TMEM129A0AVI4 362 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 CDC14CA4D256 554 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ZNF749O43361 778 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 CDRT1O95170 752 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 TSPAN19P0C672 248 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 RPS4Y1P22090 263 aaKnown RBP13.33□□□□□ -0.28
CHD3-211ENST00000481999 HSD11B2P80365 405 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ST3GAL3Q11203 375 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 TRAM2Q15035 370 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ZNF574Q6ZN55 896 aaPredicted RBP13.33□□□□□ -0.28
CHD3-211ENST00000481999 SHFQ7M4L6 423 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 MRGPREQ86SM8 312 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 LAX1Q8IWV1 398 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 OR4C3Q8NH37 302 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 GNPDA2Q8TDQ7 276 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 PIGKQ92643 395 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 SLC38A2Q96QD8 506 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 CTRCQ99895 268 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 PRSS27Q9BQR3 290 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 NRSN2Q9GZP1 204 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 TPK1Q9H3S4 243 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ZNF232Q9UNY5 417 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 PCDHGB2Q9Y5G2 931 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 SPIN1Q9Y657 262 aaPredicted RBP13.33□□□□□ -0.28
CHD3-211ENST00000481999 RFPL3O75679 317 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 NKX2-2O95096 273 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 SLC2A10O95528 541 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 IFNA8P32881 189 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 LPAL2Q16609 132 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ARMC4Q5T2S8 1044 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 B3GLCTQ6Y288 498 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 RRM2BQ7LG56 351 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 RNFT2Q96EX2 444 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 STACQ99469 402 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 DPH1Q9BZG8 443 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 HOXD1Q9GZZ0 328 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 SAP130Q9H0E3 1048 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 ISYNA1Q9NPH2 558 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 LANCL2Q9NS86 450 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 POU2F3Q9UKI9 436 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 GRIP1Q9Y3R0 1128 aa13.33□□□□□ -0.28
CHD3-211ENST00000481999 C17orf105B2RV13 164 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 CLDN4O14493 209 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 PLD2O14939 933 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 DUX1O43812 170 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 GMFGO60234 142 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 AGR2O95994 175 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 CLPSP04118 112 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 HOXD12P35452 270 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 GAS1P54826 345 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 OR2B6P58173 313 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 TSPAN31Q12999 210 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 GRM7Q14831 915 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 OR1Q1Q15612 314 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 FAAH2Q6GMR7 532 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 SPATC1Q76KD6 591 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 ZNF595Q8IYB9 648 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 KCTD7Q96MP8 289 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 KLHDC3Q9BQ90 382 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 OR8D2Q9GZM6 311 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 OR10A5Q9H207 317 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 ANKRD19PQ9H560 264 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 PRDM9Q9NQV7 894 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 MRPS33Q9Y291 106 aaKnown RBP13.32□□□□□ -0.28
CHD3-211ENST00000481999 MPDZO75970 2070 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 SSX4O60224 188 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 CCNKO75909 580 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 TIAF1O95411 115 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 MTNR1AP48039 350 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 CSTF1Q05048 431 aaKnown RBP13.32□□□□□ -0.28
CHD3-211ENST00000481999 MXD1Q05195 221 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 TPBGQ13641 420 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 BCL2A1Q16548 175 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 PLK5Q496M5 336 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 ZNF544Q6NX49 715 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 RASSF6Q6ZTQ3 369 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 NRARPQ7Z6K4 114 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 PRR22Q8IZ63 422 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 SLC38A9Q8NBW4 561 aa13.32□□□□□ -0.28
CHD3-211ENST00000481999 OR6C4Q8NGE1 309 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms