RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 FKBP9P1Q75LS8 142 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 PIWIL3Q7Z3Z3 882 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 TSEN54Q7Z6J9 526 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 CARM1Q86X55 608 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 VRK2Q86Y07 508 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 ZDHHC21Q8IVQ6 265 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 CCDC103Q8IW40 242 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 PRR22Q8IZ63 422 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 OR5L2Q8NGL0 311 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 OR52P1PQ8NH57 321 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 SPPL2AQ8TCT8 520 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 THAP3Q8WTV1 239 aaPredicted RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 RNF138Q8WVD3 245 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 RASSF5Q8WWW0 418 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 OIT3Q8WWZ8 545 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 LRTOMTQ8WZ04 291 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 PROX1Q92786 737 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 DIO2Q92813 273 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 EFHD2Q96C19 240 aaPredicted RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 OMA1Q96E52 524 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 VPS50Q96JG6 964 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 ZNF354BQ96LW1 612 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 IP6K3Q96PC2 410 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 SCNM1Q9BWG6 230 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 DEFB126Q9BYW3 111 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 YY1AP1Q9H869 796 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 TRIM45Q9H8W5 580 aaPredicted RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 MTHFD2LQ9H903 347 aaPredicted RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 LIN28AQ9H9Z2 209 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 CACYBPQ9HB71 228 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 IL1RAPQ9NPH3 570 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 FLRT3Q9NZU0 649 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 C6orf203Q9P0P8 240 aaPredicted RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 MRTO4Q9UKD2 239 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 ABCG2Q9UNQ0 655 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 IFT52Q9Y366 437 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 CHST2Q9Y4C5 530 aa6.1□□□□□ -1.43
USP48-208ENST00000479177 TPRP12270 2363 aaKnown RBP6.1□□□□□ -1.43
USP48-208ENST00000479177 HEATR5AQ86XA9 2040 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 ACACBO00763 2458 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 SPTA1P02549 2419 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CPAMD8Q8IZJ3 1885 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CDHR4A6H8M9 788 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OR6C70A6NIJ9 312 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CLDN24A6NM45 220 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 M0R3H8 397 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 WWP2O00308 870 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CASQ2O14958 399 aaPredicted RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 CLOCKO15516 846 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 ICOSLGO75144 302 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 BCAS1O75363 584 aaPredicted RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 REM1O75628 298 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OR2J2O76002 312 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 PRSS23O95084 383 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OXSR1O95747 527 aaPredicted RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 BAG2O95816 211 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 LGI1O95970 557 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 LDLRP01130 860 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CAPNS1P04632 268 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 IFNW1P05000 195 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 DBHP09172 617 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 WT1P19544 449 aaPredicted RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 HOXA5P20719 270 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 FASP25445 335 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 PEX2P28328 305 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 IL12BP29460 328 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 KRT20P35900 424 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OR1E2P47887 323 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 ATP12AP54707 1039 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 NRG3P56975 720 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 FGFBP1Q14512 234 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 LARS2Q15031 903 aaKnown RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 TRIP10Q15642 601 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 NPTX1Q15818 432 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 ZNF311Q5JNZ3 666 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 MRPL2Q5T653 305 aaKnown RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 ATP1A1-AS1Q5TC04 95 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 FNDC7Q5VTL7 733 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 AMIGO2Q86SJ2 522 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 LACC1Q8IV20 430 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CMIPQ8IY22 773 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 TAGAPQ8N103 731 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CLIP4Q8N3C7 705 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 SLC15A4Q8N697 577 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 FAM71CQ8NEG0 241 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OR4D11Q8NGI4 311 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 OR4C3Q8NH37 302 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 VANGL1Q8TAA9 524 aaPredicted RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 SLC22A8Q8TCC7 542 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 NRG4Q8WWG1 115 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 HGDQ93099 445 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 NAF1Q96HR8 494 aaKnown RBP6.09□□□□□ -1.43
USP48-208ENST00000479177 RASL10BQ96S79 203 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 ADOQ96SZ5 270 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 WFDC6Q9BQY6 131 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 HOXD1Q9GZZ0 328 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 CNTD2Q9H8S5 307 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 UBQLN4Q9NRR5 601 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 VNN3Q9NY84 501 aa6.09□□□□□ -1.43
USP48-208ENST00000479177 NDUFAF4Q9P032 175 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms