RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 HSDL2Q6YN16 418 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 QSOX2Q6ZRP7 698 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 CXXC5Q7LFL8 322 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 LNX2Q8N448 690 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 OR2I1PQ8NGU4 316 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 GATAD2BQ8WXI9 593 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 BARHL1Q9BZE3 327 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 ZNF229Q9UJW7 825 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 EP300Q09472 2414 aaPredicted RBP19.89■□□□□ 0.77
TRIM54-202ENST00000380075 LNP1A1A4G5 178 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 SLC35F4A4IF30 521 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 BHLHE40O14503 412 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 AKAP8O43823 692 aaKnown RBP19.89■□□□□ 0.77
TRIM54-202ENST00000380075 ZGLP1P0C6A0 271 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 GAAP10253 952 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 EMDP50402 254 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 CD200R1LQ6Q8B3 271 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 DGAT2L6Q6ZPD8 337 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 SHISA5Q8N114 240 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 BPIFA2Q96DR5 249 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 TRIM2Q9C040 744 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 HINT3Q9NQE9 182 aaKnown RBP19.89■□□□□ 0.77
TRIM54-202ENST00000380075 PRTFDC1Q9NRG1 225 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 SNTG1Q9NSN8 517 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 BAIAP2Q9UQB8 552 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 CSNK1G3Q9Y6M4 447 aa19.89■□□□□ 0.77
TRIM54-202ENST00000380075 A0A0B4J2E0 115 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 A0A1B0GX12 115 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CTDSP2O14595 271 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 FOXS1O43638 330 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PRAMEF2O60811 474 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 APOL3O95236 402 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 MAKP20794 623 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CSRP2Q16527 193 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 HLA-BQ31612 363 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CMIPQ8IY22 773 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 POC5Q8NA72 575 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PFN4Q8NHR9 129 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 VSTM2LQ96N03 204 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 GTPBP2Q9BX10 602 aaKnown RBP19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CHRNA10Q9GZZ6 450 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 RXFP3Q9NSD7 469 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PLCL2Q9UPR0 1127 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PI4KAP42356 2102 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF749O43361 778 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 HCN1O60741 890 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 LRP3O75074 770 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CDRT1O95170 752 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 SYPP08247 313 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 TBXA2RP21731 343 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 TNFSF8P32971 234 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 ATP6V1E1P36543 226 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 SLC9A3P48764 834 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 BDH1Q02338 343 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF141Q15928 474 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PDZK1Q5T2W1 519 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF550Q7Z398 422 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CPOQ8IVL8 374 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 DGAT2Q96PD7 388 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 MAP3K3Q99759 626 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 PELOQ9BRX2 385 aaKnown RBP19.88■□□□□ 0.77
TRIM54-202ENST00000380075 G6PC3Q9BUM1 346 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 ERVK13-1Q9NX77 482 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 HCN3Q9P1Z3 774 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 TNFRSF10DQ9UBN6 386 aa19.88■□□□□ 0.77
TRIM54-202ENST00000380075 CACNA1EQ15878 2313 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 BOLA2-SMG1P6H3BVE0 249 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 PAICSP22234 425 aaKnown RBP19.87■□□□□ 0.77
TRIM54-202ENST00000380075 GALNSP34059 522 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 FXYD6P3P58550 94 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 PLAURQ03405 335 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 BIKQ13323 160 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 TCTE1Q5JU00 501 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 SMARCD3Q6STE5 483 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 ZAR1Q86SH2 424 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 LSMEM1Q8N8F7 131 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 RNF217Q8TC41 542 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 CNOT9Q92600 299 aaKnown RBP19.87■□□□□ 0.77
TRIM54-202ENST00000380075 C1GALT1C1Q96EU7 318 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 SLC38A3Q99624 504 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF426Q9BUY5 554 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 GAREM1Q9H706 876 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 Q9N2J8 555 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 CMC2Q9NRP2 79 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 C20orf141Q9NUB4 165 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 SIGLEC7Q9Y286 467 aa19.87■□□□□ 0.77
TRIM54-202ENST00000380075 TRDV1A0A1B0GX56 115 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 PLD2O14939 933 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 CTSBP07858 339 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 GALP22466 123 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 RPS25P62851 125 aaKnown RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 PSPHP78330 225 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 C22orf42Q6IC83 251 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 NIPAL3Q6P499 406 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 TMPRSS11AQ6ZMR5 421 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 MEPCEQ7L2J0 689 aaKnown RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 SHFQ7M4L6 423 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 C17orf82Q86X59 251 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 SDR16C5Q8N3Y7 309 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms