RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 MSRB3Q8IXL7 192 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 LILRA2Q8N149 483 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 FBXO27Q8NI29 283 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 POC1BQ8TC44 478 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 WDR60Q8WVS4 1066 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 ST8SIA1Q92185 356 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 TMEM19Q96HH6 336 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 TREX2Q9BQ50 279 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-201ENST00000332345 UCK2Q9BZX2 261 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 RUBCNLQ9H714 662 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 EXOSC3Q9NQT5 275 aaKnown RBP12.63□□□□□ -0.39
LIMS1-201ENST00000332345 METRNQ9UJH8 293 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 PRDM4Q9UKN5 801 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 IFT52Q9Y366 437 aa12.63□□□□□ -0.39
LIMS1-201ENST00000332345 INTS1Q8N201 2190 aaKnown RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 TRBV5-3A0A0A0MS03 114 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 SLC22A20A6NK97 555 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 KDM4EB2RXH2 506 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 EIF1AYO14602 144 aaKnown RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 SLC22A2O15244 555 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CCDC22O60826 627 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NPPAP01160 153 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NID1P14543 1247 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 PRKCAP17252 672 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 RPS4Y1P22090 263 aaKnown RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ELK4P28324 431 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 OPRM1P35372 400 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CLDN15P56746 228 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NFYCQ13952 458 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CYLC2Q14093 348 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 MAPK11Q15759 364 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 TOMM34Q15785 309 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 LIN52Q52LA3 116 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 SLC25A53Q5H9E4 307 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 GCNT6Q5T4J0 391 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 OR2A2Q6IF42 318 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ESPNLQ6ZVH7 1005 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CPLX4Q7Z7G2 160 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 HMGN2P46Q86SG4 172 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF440Q8IYI8 595 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 C9orf106Q8NAJ2 232 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 FAM71CQ8NEG0 241 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 OR52P1PQ8NH57 321 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF563Q8TA94 476 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 C10orf82Q8WW14 230 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 LRRC46Q96FV0 321 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ANKRD27Q96NW4 1050 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CGREF1Q99674 301 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NPAS1Q99742 590 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 KLHDC3Q9BQ90 382 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NSRP1Q9H0G5 558 aaKnown RBP12.62□□□□□ -0.39
LIMS1-201ENST00000332345 BCL2L10Q9HD36 194 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 TIGARQ9NQ88 270 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 SERINC1Q9NRX5 453 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 ACER3Q9NUN7 267 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 CLCF1Q9UBD9 225 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 NBPF19A0A087WUL8 3843 aa12.62□□□□□ -0.39
LIMS1-201ENST00000332345 GMNCA6NCL1 334 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 CLDN24A6NM45 220 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 FAM90A27PA6NNH2 459 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 BBIP1A8MTZ0 92 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 H0YC42 278 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 ETV2O00321 342 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 ADAMDEC1O15204 470 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 PGM3O95394 542 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 IL18BPO95998 194 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 THBS1P07996 1170 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 NUDT7P0C024 238 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 TMIGD3P0DMS9 266 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 UQCRBP14927 111 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 BMP5P22003 454 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 SLC6A2P23975 617 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 FKBP2P26885 142 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 GRNP28799 593 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 LSP1P33241 339 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 RYKP34925 604 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 EIF1AXP47813 144 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 TPD52P55327 224 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 CARD18P57730 90 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 SESN3P58005 492 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 FOXF1Q12946 379 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 COQ5Q5HYK3 327 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 MRPL2Q5T653 305 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 REEP3Q6NUK4 255 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 SPATA21Q7Z572 469 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 GGNQ86UU5 652 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 RETREG3Q86VR2 466 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 KRT73Q86Y46 540 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 LIX1LQ8IVB5 337 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 BBS10Q8TAM1 723 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 CNOT9Q92600 299 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 MAL2Q969L2 176 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 SH3GL1Q99961 368 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 ELAC2Q9BQ52 826 aaKnown RBP12.61□□□□□ -0.39
LIMS1-201ENST00000332345 PINK1Q9BXM7 581 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 PRRG4Q9BZD6 226 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 TMEM38AQ9H6F2 299 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF175Q9Y473 711 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 CAPN7Q9Y6W3 813 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 KIAA1549Q9HCM3 1950 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms