RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GRHL3Q8TE85 626 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 CYGBQ8WWM9 190 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ZNF524Q96C55 264 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 NODALQ96S42 347 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 KLHDC3Q9BQ90 382 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 Q9H521 79 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 KRT84Q9NSB2 600 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 KIF17Q9P2E2 1029 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 SLC7A7Q9UM01 511 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 CPAMD8Q8IZJ3 1885 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 AKAP13Q12802 2813 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 A0A0B4J2E0 115 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 A0A1B0GX12 115 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 ZNF264O43296 627 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 EPHA2P29317 976 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 RAD23AP54725 363 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 ZER1Q7Z7L7 766 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 SLC15A4Q8N697 577 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 CNBD2Q96M20 576 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 GRIP2Q9C0E4 1043 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 CARD8Q9Y2G2 431 aa13.06□□□□□ -0.32
USP39-220ENST00000613444 A0A1B0GWA3 101 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 SLC16A6O15403 523 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ITGA10O75578 1167 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 RPSAP08865 295 aaKnown RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 CHAF1BQ13112 559 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 PDK3Q15120 406 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 NTRK2Q16620 822 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ZNF791Q3KP31 576 aaPredicted RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 ZNF440Q8IYI8 595 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 IL22RA1Q8N6P7 574 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 TOR1AIP2Q8NFQ8 470 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 SLC22A8Q8TCC7 542 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ACOT11Q8WXI4 607 aaPredicted RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 TTC9Q92623 222 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 SLC38A4Q969I6 547 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 GPA33Q99795 319 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 GABARAPL3Q9BY60 117 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 TRIM2Q9C040 744 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 LAT2Q9GZY6 243 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 B4DXG7 233 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 OR10H3O60404 316 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ANGPTL1O95841 491 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ADAP00813 363 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ICAM2P13598 275 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 POU2F1P14859 743 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 MYF6P23409 242 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 IFNA8P32881 189 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 GAS1P54826 345 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ZNF117Q03924 483 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ATP1A4Q13733 1029 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 RTP5Q14D33 572 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 RSPO4Q2I0M5 234 aaPredicted RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 FCRLBQ6BAA4 426 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 H3F3CQ6NXT2 135 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 C1orf94Q6P1W5 598 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 UGT2A3Q6UWM9 527 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 NUP54Q7Z3B4 507 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 APLFQ8IW19 511 aaPredicted RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 PARP8Q8N3A8 854 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 OR5M3Q8NGP4 307 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 TMEM255BQ8WV15 326 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 GTPBP3Q969Y2 492 aaKnown RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 DGCR6LQ9BY27 220 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 TBL1XR1Q9BZK7 514 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 TMEM27Q9HBJ8 222 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 PAPOLBQ9NRJ5 636 aaKnown RBP13.05□□□□□ -0.32
USP39-220ENST00000613444 ICAM5Q9UMF0 924 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 MGAT4BQ9UQ53 548 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 POFUT2Q9Y2G5 429 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 ORC6Q9Y5N6 252 aa13.05□□□□□ -0.32
USP39-220ENST00000613444 SPTBN2O15020 2390 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 H3BNH8 94 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 NDUFB5O43674 189 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 MST1P26927 711 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 RYKP34925 604 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 SOX3P41225 446 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 CLK3P49761 638 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 MLF1P58340 268 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 KLHL17Q6TDP4 642 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 LINC00114Q6XXX2 140 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 LINC00471Q8N535 108 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 OR10G3Q8NGC4 313 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 SPACA9Q96E40 222 aaPredicted RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 ZNF426Q9BUY5 554 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 REV1Q9UBZ9 1251 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 YARS2Q9Y2Z4 477 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 LOC100130705A0A1B0GUX0 176 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 GTPBP1O00178 669 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 CHP2O43745 196 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 EIF4E2O60573 245 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 OR6B1O95007 311 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 TP53P04637 393 aaPredicted RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 SERPINA7P05543 415 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 PTGDSP41222 190 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 OMPP47874 163 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 TMED10P49755 219 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 IL1RL1Q01638 556 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 NPRL3Q12980 569 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 TTC23Q5W5X9 447 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms