RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SEC14L5O43304 696 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CYP7B1O75881 506 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CD1EP15812 388 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 PPIBP23284 216 aaKnown RBP15.2■□□□□ 0.02
TRIM28-215ENST00000601150 PSMA4P25789 261 aaKnown RBP15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CCR4P51679 360 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CLDN20P56880 219 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 SF3A3Q12874 501 aaKnown RBP eCLIP15.2■□□□□ 0.023e-7■■■■■ 27.3
TRIM28-215ENST00000601150 FADDQ13158 208 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 SKP2Q13309 424 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CBFBQ13951 182 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 RGNQ15493 299 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 MSRB3Q8IXL7 192 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 GPR119Q8TDV5 335 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 TSPEARQ8WU66 669 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 WNT2BQ93097 391 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 ZG16BQ96DA0 208 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 NPAS1Q99742 590 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 TM9SF2Q99805 663 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 UCK2Q9BZX2 261 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 KCNJ16Q9NPI9 418 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-215ENST00000601150 MRGBPQ9NV56 204 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 CALML5Q9NZT1 146 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 LEF1Q9UJU2 399 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-215ENST00000601150 GPC6Q9Y625 555 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-215ENST00000601150 MED12LQ86YW9 2145 aa15.2■□□□□ 0.02
TRIM28-215ENST00000601150 TMEM247A6NEH6 219 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 AGAP5A6NIR3 686 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 ANGPT2O15123 496 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 BCHEP06276 602 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 TFPTP0C1Z6 253 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 UBTFL6P0CB48 400 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 PGM1P36871 562 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 SUCLG1P53597 346 aaKnown RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 CLDN15P56746 228 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 RPS3AP61247 264 aaKnown RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 FOXF1Q12946 379 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 GNA13Q14344 377 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 MAPK11Q15759 364 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 SLC25A35Q3KQZ1 300 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 HMGN2P46Q86SG4 172 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 GRAMD2AQ8IUY3 354 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 LIX1LQ8IVB5 337 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 C9orf106Q8NAJ2 232 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 NAXEQ8NCW5 288 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 FAM71CQ8NEG0 241 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 POC1BQ8TC44 478 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 SLC38A5Q8WUX1 472 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 ZNF317Q96PQ6 595 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 QRSL1Q9H0R6 528 aaKnown RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 RUBCNLQ9H714 662 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 VAPAQ9P0L0 249 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 SLAMF8Q9P0V8 285 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 KLHL14Q9P2G3 628 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 CLCF1Q9UBD9 225 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-215ENST00000601150 NDUFAF1Q9Y375 327 aa15.19■□□□□ 0.02
TRIM28-215ENST00000601150 TRBV5-3A0A0A0MS03 114 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 NKX2-6A6NCS4 301 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 H0YC42 278 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 DVL2O14641 736 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 DNAJA2O60884 412 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 DBIP07108 87 aaKnown RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 SNRPB2P08579 225 aaKnown RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 BMP2P12643 396 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 PRKCAP17252 672 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 RPS4Y1P22090 263 aaKnown RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ME2P23368 584 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ELK4P28324 431 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ADH6P28332 368 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 CRISP3P54108 245 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 TPD52P55327 224 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 RAC1P63000 192 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 KCNJ10P78508 379 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 QPRTQ15274 297 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 TOMM34Q15785 309 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 SLC25A53Q5H9E4 307 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ZNF787Q6DD87 383 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 GGNQ86UU5 652 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 CMIPQ8IY22 773 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 PEX5LQ8IYB4 626 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 FBXO27Q8NI29 283 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 WDR60Q8WVS4 1066 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 MRGPRX4Q96LA9 322 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ZFP3Q96NJ6 502 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 THUMPD3Q9BV44 507 aaKnown RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 A4GALTQ9NPC4 353 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 ZNF629Q9UEG4 869 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 CORO2BQ9UQ03 480 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 GMEB1Q9Y692 573 aa15.18■□□□□ 0.02
TRIM28-215ENST00000601150 INTS1Q8N201 2190 aaKnown RBP15.18■□□□□ 0.02
TRIM28-215ENST00000601150 DSPPQ9NZW4 1301 aa15.17■□□□□ 0.02
TRIM28-215ENST00000601150 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.17■□□□□ 0.02
TRIM28-215ENST00000601150 SLC22A20A6NK97 555 aa15.17■□□□□ 0.02
TRIM28-215ENST00000601150 C19orf84I3L1E1 186 aa15.17■□□□□ 0.02
TRIM28-215ENST00000601150 EIF1AYO14602 144 aaKnown RBP15.17■□□□□ 0.02
TRIM28-215ENST00000601150 RCBTB2O95199 551 aa15.17■□□□□ 0.02
TRIM28-215ENST00000601150 TMIGD3P0DMS9 266 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-215ENST00000601150 IL7RP16871 459 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms