RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 OR2V1Q8NHB1 315 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 CEP70Q8NHQ1 597 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 ZFP28Q8NHY6 868 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 GPR151Q8TDV0 419 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 COQ8BQ96D53 544 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 FAM120BQ96EK7 910 aaKnown RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 OTUB1Q96FW1 271 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 SORT1Q99523 831 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 USB1Q9BQ65 265 aaKnown RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 KLHDC3Q9BQ90 382 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 TACO1Q9BSH4 297 aaKnown RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 NGBQ9NPG2 151 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 MED17Q9NVC6 651 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 LAMP3Q9UQV4 416 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 SNX8Q9Y5X2 465 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 STAB1Q9NY15 2570 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 A0A0J9YW62 118 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 TMEM114B3SHH9 223 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 TNFSF11O14788 317 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 BIRC5O15392 142 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 KCNK2O95069 426 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 OXSR1O95747 527 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-212ENST00000597995 DANCRP0C864 163 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 G6PDP11413 515 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 ME2P23368 584 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 AGTR1P30556 359 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 ZNF41P51814 821 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-212ENST00000597995 ABCE1P61221 599 aaKnown RBP11.15□□□□□ -0.62
TRIM28-212ENST00000597995 VEZF1Q14119 521 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 PLPPR5Q32ZL2 321 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 ATP6AP1LQ52LC2 224 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 NCMAPQ5T1S8 102 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 HBMQ6B0K9 141 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 LRIG3Q6UXM1 1119 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 FNDC5Q8NAU1 212 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 LILRB1Q8NHL6 650 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-212ENST00000597995 PSMA8Q8TAA3 256 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 SLC9A6Q92581 669 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 OSTF1Q92882 214 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 TUBGCP3Q96CW5 907 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 PPP1R36Q96LQ0 422 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 RNF145Q96MT1 663 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 MS4A4EQ96PG1 132 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 REG4Q9BYZ8 158 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 CXorf36Q9H7Y0 433 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 GP6Q9HCN6 339 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 RNF115Q9Y4L5 304 aa11.15□□□□□ -0.62
TRIM28-212ENST00000597995 RNF223E7ERA6 249 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 TM9SF1O15321 606 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 TLX2O43763 284 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 GCM2O75603 506 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 HSPA4LO95757 839 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 C6orf47O95873 294 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 HMGN2P05204 90 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 CD3EP07766 207 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 NID1P14543 1247 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 BGNP21810 368 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 ADH6P28332 368 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 MAPK1P28482 360 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 HPCAL1P37235 193 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 EIF1P41567 113 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 CARD18P57730 90 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 C21orf58P58505 322 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 EMX2Q04743 252 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 RNPS1Q15287 305 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 PDCD2Q16342 344 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 TMEM201Q5SNT2 666 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 SFRP5Q5T4F7 317 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 CCNJQ5T5M9 372 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 FIGNL1Q6PIW4 674 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 SZRD1Q7Z422 152 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 GABRG1Q8N1C3 465 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 RAB3IL1Q8TBN0 382 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 SMAP2Q8WU79 429 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 HSD17B8Q92506 261 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 FBXW5Q969U6 566 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 CPNE4Q96A23 557 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 S100PBPQ96BU1 408 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 REXO5Q96IC2 774 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 KLHL15Q96M94 604 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 NPAS1Q99742 590 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 CENPHQ9H3R5 247 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 ESRP2Q9H6T0 727 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 C12orf49Q9H741 205 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 AKTIPQ9H8T0 292 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 TIGARQ9NQ88 270 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 UBQLN4Q9NRR5 601 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 ZCCHC3Q9NUD5 404 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 HAO1Q9UJM8 370 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 ACTL7BQ9Y614 415 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 KCNE3Q9Y6H6 103 aa11.14□□□□□ -0.63
TRIM28-212ENST00000597995 ANK3Q12955 4377 aaKnown RBP11.14□□□□□ -0.63
TRIM28-212ENST00000597995 A0A1W2PQD3 144 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 IFNA2P01563 188 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 OPN1LWP04000 364 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 TP53P04637 393 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-212ENST00000597995 FESP07332 822 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 THBS1P07996 1170 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 SOD3P08294 240 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 HPGDP15428 266 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms