RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SPATA19Q7Z5L4 167 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 WDR31Q8NA23 367 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 RNF214Q8ND24 703 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 WDR60Q8WVS4 1066 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 EXOSC8Q96B26 276 aaKnown RBP15.73■□□□□ 0.11
CLK3-227ENST00000570296 ZNF775Q96BV0 537 aaPredicted RBP15.73■□□□□ 0.11
CLK3-227ENST00000570296 LRRC37BQ96QE4 947 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 SLC6A7Q99884 636 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 SLITRK2Q9H156 845 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 DDX28Q9NUL7 540 aaKnown RBP15.73■□□□□ 0.11
CLK3-227ENST00000570296 ASB6Q9NWX5 421 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 MCM8Q9UJA3 840 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 C19orf53Q9UNZ5 99 aaPredicted RBP15.73■□□□□ 0.11
CLK3-227ENST00000570296 SLC12A4Q9UP95 1085 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 MOKQ9UQ07 419 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 AMDHD2Q9Y303 409 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 ZNF195O14628 629 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 KCNH1O95259 989 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 PSMG1O95456 288 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 PNPP00491 289 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 ALDH18A1P54886 795 aaKnown RBP15.72■□□□□ 0.11
CLK3-227ENST00000570296 DLG1Q12959 904 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 PPP1R7Q15435 360 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 METTL2BQ6P1Q9 378 aaKnown RBP15.72■□□□□ 0.11
CLK3-227ENST00000570296 MISPQ8IVT2 679 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 C17orf78Q8N4C9 275 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 BPIFB2Q8N4F0 458 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 CDK15Q96Q40 435 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 LMF2Q9BU23 707 aaKnown RBP15.72■□□□□ 0.11
CLK3-227ENST00000570296 SHCBP1LQ9BZQ2 653 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 SLC35C2Q9NQQ7 365 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 CA10Q9NS85 328 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 MALT1Q9UDY8 824 aa15.72■□□□□ 0.11
CLK3-227ENST00000570296 TTC36A6NLP5 189 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 OXSR1O95747 527 aaPredicted RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 IGKV1D-16P01601 117 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 IGHV3-9P01782 118 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 GFAPP14136 432 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 ARL1P40616 181 aaPredicted RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 SLC29A2Q14542 456 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 PFKFB4Q16877 469 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 TSNAXIP1Q2TAA8 658 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 GLE1Q53GS7 698 aaKnown RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 FAHD2BQ6P2I3 314 aaPredicted RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 C1orf229Q6ZS94 237 aaPredicted RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 GATSQ8NAP1 163 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 OR51F2Q8NH61 342 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 B4GALNT2Q8NHY0 566 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 UBASH3BQ8TF42 649 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 APH1AQ96BI3 265 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 FAHD2AQ96GK7 314 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 SH3YL1Q96HL8 342 aaPredicted RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 KLHDC3Q9BQ90 382 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 ANKZF1Q9H8Y5 726 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 EMC3Q9P0I2 261 aa15.71■□□□□ 0.11
CLK3-227ENST00000570296 TNPO3Q9Y5L0 923 aaKnown RBP15.71■□□□□ 0.11
CLK3-227ENST00000570296 LOC105371242A0A075B767 164 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 TRAV20A0A0B4J274 112 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 OR7A17O14581 309 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 TFP02787 698 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 SLC7A1P30825 629 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 FNTAP49354 379 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 IL13RA1P78552 427 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 ADIPOQQ15848 244 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 C1QL2Q7Z5L3 287 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 ANKMY2Q8IV38 441 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 C1orf162Q8NEQ5 155 aaPredicted RBP15.7■□□□□ 0.1
CLK3-227ENST00000570296 OR4C3Q8NH37 302 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 RHEBL1Q8TAI7 183 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 ATP6V1E2Q96A05 226 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 ELOVL6Q9H5J4 265 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 NOL11Q9H8H0 719 aaKnown RBP15.7■□□□□ 0.1
CLK3-227ENST00000570296 NTN4Q9HB63 628 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 LPAR2Q9HBW0 351 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 SLC17A5Q9NRA2 495 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 TXNDC16Q9P2K2 825 aa15.7■□□□□ 0.1
CLK3-227ENST00000570296 IGKV3D-15A0A087WSY6 115 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 CCDC189A1A4V9 331 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 ITGA5P08648 1049 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 IL3P08700 152 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 OR4A8P0C604 315 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 GABRA3P34903 492 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 PRIM2P49643 509 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 CCNG1P51959 295 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 SLC25A3Q00325 362 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 OR2L13Q8N349 312 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 C1orf52Q8N6N3 182 aaKnown RBP15.69■□□□□ 0.1
CLK3-227ENST00000570296 CLDND2Q8NHS1 167 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 FBXO27Q8NI29 283 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 RBBP8Q99708 897 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 BRF2Q9HAW0 419 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 NMRK1Q9NWW6 199 aa15.69■□□□□ 0.1
CLK3-227ENST00000570296 GPC6Q9Y625 555 aaPredicted RBP15.69■□□□□ 0.1
CLK3-227ENST00000570296 GXYLT2A0PJZ3 443 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 UPK1AO00322 258 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 PIAS1O75925 651 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 SELENBP1Q13228 472 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 HEPACAMQ14CZ8 416 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 PDK3Q15120 406 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 SGO1Q5FBB7 561 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms