RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	FKRP	Q9H9S5	495 aa		10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	SLC35C2	Q9NQQ7	365 aa		10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	KLHL9	Q9P2J3	617 aa		10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	TXNDC16	Q9P2K2	825 aa		10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	DMGDH	Q9UI17	866 aa	Known RBP	10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	MRTO4	Q9UKD2	239 aa	Known RBP	10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	C19orf53	Q9UNZ5	99 aa	Predicted RBP	10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	MOK	Q9UQ07	419 aa		10.27	□□□□□ -0.77
CLK3-222	ENST00000568232	GOLGA6L10	A0A0M3HER8	536 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	PGRMC1	O00264	195 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ZNF195	O14628	629 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	JUN	P05412	331 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	GIF	P27352	417 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	SSTR1	P30872	391 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	MPI	P34949	423 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	PSMD4	P55036	377 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	SNRPD2	P62316	118 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	SLC25A3	Q00325	362 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	TRAF3	Q13114	568 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	GABRA6	Q16445	453 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	FBXW9	Q5XUX1	488 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	USP43	Q70EL4	1123 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	RPS27L	Q71UM5	84 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ZAR1	Q86SH2	424 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ZBED8	Q8IZ13	594 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	CENPL	Q8N0S6	344 aa	Predicted RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ZCCHC24	Q8N2G6	241 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	WDR31	Q8NA23	367 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	SPC24	Q8NBT2	197 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	FBXO27	Q8NI29	283 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ZFP90	Q8TF47	636 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	BBS4	Q96RK4	519 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	CPNE1	Q99829	537 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	ELOVL6	Q9H5J4	265 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	LPAR2	Q9HBW0	351 aa		10.26	□□□□□ -0.77
CLK3-222	ENST00000568232	CPSF2	Q9P2I0	782 aa	Known RBP	10.26	□□□□□ -0.77
CLK3-222	ENST00000568232		A0A087WV62	115 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ESPN	B1AK53	854 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	PPP6C	O00743	305 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	TP73	O15350	636 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	CYTIP	O60759	359 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SNUPN	O95149	360 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	PSMG1	O95456	288 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ARAF	P10398	606 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	DAO	P14920	347 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	PGC	P20142	388 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	EPHA1	P21709	976 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	PCMT1	P22061	227 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SERPINF1	P36955	418 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	GP5	P40197	560 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	LIMS1	P48059	325 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	RNF144A	P50876	292 aa	Predicted RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	RAE1	P78406	368 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ILF2	Q12905	390 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	TRADD	Q15628	312 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ZNHIT3	Q15649	155 aa	Predicted RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	CD226	Q15762	336 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	GLE1	Q53GS7	698 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	TCHHL1	Q5QJ38	904 aa	Predicted RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	C9orf135	Q5VTT2	229 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SHQ1	Q6PI26	577 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SPATA19	Q7Z5L4	167 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	GALNT5	Q7Z7M9	940 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	GLCCI1	Q86VQ1	547 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SAMD14	Q8IZD0	417 aa	Predicted RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	OR4F6	Q8NGB9	312 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	RHEBL1	Q8TAI7	183 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SELENOM	Q8WWX9	145 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	MRPL24	Q96A35	216 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ZNF524	Q96C55	264 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	PBK	Q96KB5	322 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	MUS81	Q96NY9	551 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	LMF2	Q9BU23	707 aa	Known RBP	10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ESM1	Q9NQ30	184 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	GIMAP4	Q9NUV9	329 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	HIF1AN	Q9NWT6	349 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	MCM8	Q9UJA3	840 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	USP22	Q9UPT9	525 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	SPEF1	Q9Y4P9	236 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	RYR3	Q15413	4870 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ARFGEF3	Q5TH69	2177 aa		10.25	□□□□□ -0.77
CLK3-222	ENST00000568232	ZNF724	A8MTY0	619 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	MYO1G	B0I1T2	1018 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232		B4DSR2	109 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232		E7ESA3	106 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	LYNX1	G3V0Z9	82 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	OIP5	O43482	229 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	KCNH1	O95259	989 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	LYNX1	P0DP58	116 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	CHN1	P15882	459 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	TSPAN8	P19075	237 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	ZFP36	P26651	326 aa	Known RBP	10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	ELK4	P28324	431 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	CDC25B	P30305	580 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	NTF4	P34130	210 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	EIF1	P41567	113 aa	Known RBP	10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	NCBP2	P52298	156 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	RAC3	P60763	192 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	SLC29A2	Q14542	456 aa		10.24	□□□□□ -0.77
CLK3-222	ENST00000568232	TOMM34	Q15785	309 aa	Predicted RBP	10.24	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 221.1 ms