RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 NAXEQ8NCW5 288 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 OR5M1Q8NGP8 315 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 OR9I1Q8NGQ6 314 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 OR5W2Q8NH69 310 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 ZFP90Q8TF47 636 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 SMPDL3BQ92485 455 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 TRNT1Q96Q11 434 aaKnown RBP12.08□□□□□ -0.48
CLK3-216ENST00000564468 TREX2Q9BQ50 279 aaPredicted RBP12.08□□□□□ -0.48
CLK3-216ENST00000564468 SFXN3Q9BWM7 321 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 LAT2Q9GZY6 243 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 RAD21L1Q9H4I0 556 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.08□□□□□ -0.48
CLK3-216ENST00000564468 ICAM5Q9UMF0 924 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 SLC35A3Q9Y2D2 325 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 ZNF175Q9Y473 711 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 MTORP42345 2549 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 TMEM247A6NEH6 219 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 SLC22A20A6NK97 555 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 GJE1A6NN92 205 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 KDM4EB2RXH2 506 aaPredicted RBP12.07□□□□□ -0.48
CLK3-216ENST00000564468 SYT5O00445 386 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 EDF1O60869 148 aaKnown RBP12.07□□□□□ -0.48
CLK3-216ENST00000564468 UGT2B17O75795 530 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 LINGO3P0C6S8 592 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 NR2F1P10589 423 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 FCGR2AP12318 317 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 IGFBP2P18065 325 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 ELK4P28324 431 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 SSTR2P30874 369 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 GNA13Q14344 377 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 SQLEQ14534 574 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 FBXL19-AS1Q494R0 122 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 TYW3Q6IPR3 259 aaKnown RBP12.07□□□□□ -0.48
CLK3-216ENST00000564468 CBLN3Q6UW01 205 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 LRRC74BQ6ZQY2 392 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 ESPNLQ6ZVH7 1005 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
CLK3-216ENST00000564468 METTL25Q8N6Q8 603 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 VPS33AQ96AX1 596 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 ARSGQ96EG1 525 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 MRGPRX4Q96LA9 322 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 RNF145Q96MT1 663 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 PINK1Q9BXM7 581 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 PIGMQ9H3S5 423 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 TPT1P8Q9HAU6 139 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 MED4Q9NPJ6 270 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 NPDC1Q9NQX5 325 aaPredicted RBP12.07□□□□□ -0.48
CLK3-216ENST00000564468 MRGBPQ9NV56 204 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 CALML5Q9NZT1 146 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 CCDC167Q9P0B6 97 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 P2RX2Q9UBL9 471 aa12.07□□□□□ -0.48
CLK3-216ENST00000564468 HIVEP1P15822 2718 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 EIF1AYO14602 144 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 CYP7B1O75881 506 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 H6PDO95479 791 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 NCF2P19878 526 aaPredicted RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 PGCP20142 388 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 CRATP43155 626 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 CCR4P51679 360 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 SUCLG1P53597 346 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 CLDN15P56746 228 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 CLDN20P56880 219 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 FGFBP1Q14512 234 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 BLOC1S3Q6QNY0 202 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 DNAJC14Q6Y2X3 702 aaPredicted RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 FRRS1Q6ZNA5 592 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 KIF18BQ86Y91 864 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 CMIPQ8IY22 773 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 RELL2Q8NC24 303 aaPredicted RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 RFWD2Q8NHY2 731 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 PNPT1Q8TCS8 783 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 GPR119Q8TDV5 335 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 TMEM234Q8WY98 164 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 GTF2H4Q92759 462 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 RNASE6Q93091 150 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 INTS12Q96CB8 462 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 SPDL1Q96EA4 605 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 C14orf79Q96F83 325 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 PRRG4Q9BZD6 226 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 MTHFD2LQ9H903 347 aaPredicted RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 CACYBPQ9HB71 228 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 TIGARQ9NQ88 270 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 ZNF446Q9NWS9 450 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 MCTS1Q9ULC4 181 aaKnown RBP12.06□□□□□ -0.48
CLK3-216ENST00000564468 L3MBTL1Q9Y468 752 aa12.06□□□□□ -0.48
CLK3-216ENST00000564468 ANKHD1Q8IWZ3 2542 aaKnown RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 A0A096LPI6 279 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SHISA8B8ZZ34 492 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 EEF1E1-BLOC1S5C9J1V9 151 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 EEF1E1O43324 174 aaKnown RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 ATP8B1O43520 1251 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SYNGR4O95473 234 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 TGM6O95932 706 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 UBTFL6P0CB48 400 aaPredicted RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 TROVE2P10155 538 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLK3-216ENST00000564468 PRKCAP17252 672 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 PPIBP23284 216 aaKnown RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 PSMA4P25789 261 aaKnown RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 EIF1AXP47813 144 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms