RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 ZNF708P17019 499 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 ZNF17P17021 662 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 GPX2P18283 190 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 RPS4Y1P22090 263 aaKnown RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 PGM1P36871 562 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 CLDN18P56856 261 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 KCNJ10P78508 379 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 PMPCAQ10713 525 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 SKP2Q13309 424 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 CBFBQ13951 182 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 CYLC2Q14093 348 aaPredicted RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 CAPRIN1Q14444 709 aaKnown RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 SF3B4Q15427 424 aaKnown RBP eCLIP11.17□□□□□ -0.626e-6■□□□□ 11
SMAD3-205ENST00000558428 TMEM44Q2T9K0 475 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 ACSF3Q4G176 576 aaPredicted RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 REP15Q6BDI9 236 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 MTDHQ86UE4 582 aaKnown RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 PEX5LQ8IYB4 626 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 UBQLNLQ8IYU4 475 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 C10orf111Q8N326 155 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 GTPBP8Q8N3Z3 284 aaPredicted RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 OR10Q1Q8NGQ4 319 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 OR5W2Q8NH69 310 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 WDR60Q8WVS4 1066 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 SMPDL3BQ92485 455 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 RND1Q92730 232 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 ZBTB8AQ96BR9 441 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 ANKRD27Q96NW4 1050 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 TRIB1Q96RU8 372 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 NPAS1Q99742 590 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 TREX2Q9BQ50 279 aaPredicted RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 TTYH2Q9BSA4 534 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 THUMPD3Q9BV44 507 aaKnown RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 TRIM8Q9BZR9 551 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 CACYBPQ9HB71 228 aaKnown RBP11.17□□□□□ -0.62
SMAD3-205ENST00000558428 COQ3Q9NZJ6 369 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 MED12LQ86YW9 2145 aa11.17□□□□□ -0.62
SMAD3-205ENST00000558428 DSPPQ9NZW4 1301 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 A0A0G2JPF8 293 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 HNRNPCL2B2RXH8 293 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 HNRNPCL3B7ZW38 293 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 MRASO14807 208 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 SEC14L5O43304 696 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 HNRNPCL1O60812 293 aaKnown RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 BCAS1O75363 584 aaPredicted RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 EPPINO95925 133 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 DBIP07108 87 aaKnown RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 LINGO3P0C6S8 592 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 HNRNPCL4P0DMR1 293 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 GLI4P10075 376 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 ARAFP10398 606 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 NID1P14543 1247 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 EIF1P41567 113 aaKnown RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 MTPNP58546 118 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 FOXF1Q12946 379 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 SELPLGQ14242 412 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 TOMM34Q15785 309 aaPredicted RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 BCL2A1Q16548 175 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 TRMT5Q32P41 509 aaKnown RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 LIN52Q52LA3 116 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 COQ5Q5HYK3 327 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 XKRXQ6PP77 449 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 CMIPQ8IY22 773 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 MEIOBQ8N635 442 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 POU5F2Q8N7G0 328 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 OR52P1PQ8NH57 321 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 NFKBIDQ8NI38 313 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 BBS10Q8TAM1 723 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 POC1BQ8TC44 478 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 ZPLD1Q8TCW7 415 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 GPR119Q8TDV5 335 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 SDCCAG3Q96C92 435 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 ARSGQ96EG1 525 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 RNF145Q96MT1 663 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 PSMG3-AS1Q96PY0 264 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 TUBA1CQ9BQE3 449 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 STOML1Q9UBI4 398 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 GPC6Q9Y625 555 aaPredicted RBP11.16□□□□□ -0.62
SMAD3-205ENST00000558428 HECTD1Q9ULT8 2610 aa11.16□□□□□ -0.62
SMAD3-205ENST00000558428 FLNBO75369 2602 aaKnown RBP11.15□□□□□ -0.62
SMAD3-205ENST00000558428 UTP20O75691 2785 aaKnown RBP11.15□□□□□ -0.62
SMAD3-205ENST00000558428 NBPF19A0A087WUL8 3843 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 C7orf72A4D263 438 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 KDM4EB2RXH2 506 aaPredicted RBP11.15□□□□□ -0.62
SMAD3-205ENST00000558428 PGCP20142 388 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 AGAP20933 346 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 ME2P23368 584 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 CDK6Q00534 326 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 SCARB2Q14108 478 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 LARS2Q15031 903 aaKnown RBP11.15□□□□□ -0.62
SMAD3-205ENST00000558428 QPRTQ15274 297 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 MRPL2Q5T653 305 aaKnown RBP11.15□□□□□ -0.62
SMAD3-205ENST00000558428 PRAMEF8Q5VWM4 474 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 PRAMEF7Q5VXH5 474 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 NSUN5P2Q63ZY6 315 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 SEM1Q6ZVN7 128 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 CHMP1BQ7LBR1 199 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 VRK2Q86Y07 508 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 LACC1Q8IV20 430 aa11.15□□□□□ -0.62
SMAD3-205ENST00000558428 METTL25Q8N6Q8 603 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms