RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 LAIR2Q6ISS4 152 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GPR153Q6NV75 609 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MED27Q6P2C8 311 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ADAMTSL4Q6UY14 1074 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PDZD3Q86UT5 571 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 IGFN1Q86VF2 1251 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DHRSXQ8N5I4 330 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SETD7Q8WTS6 366 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SUSD6Q92537 303 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RAB24Q969Q5 203 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MYADMQ96S97 322 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF559Q9BR84 538 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PCED1AQ9H1Q7 454 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 KCNK12Q9HB15 430 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SMURF1Q9HCE7 757 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TMEM140Q9NV12 185 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GDF2Q9UK05 429 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 NDRG2Q9UN36 371 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PCDHGA6Q9Y5G7 932 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RFXAPO00287 272 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SAP18O00422 153 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FLRT2O43155 660 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 LRRTM2O43300 516 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CHP2O43745 196 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PCDH7O60245 1069 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PCDHGA12O60330 932 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 STX11O75558 287 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 C1GALT1C1LP0DN25 315 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GTF2E2P29084 291 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 WASP42768 502 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 VLDLRP98155 873 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FGL1Q08830 312 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TRA2AQ13595 282 aaKnown RBP eCLIP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PDE7AQ13946 482 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 AGERQ15109 404 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MPPED2Q15777 294 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 VMACQ2NL98 169 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RNF212Q495C1 297 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 IER5LQ5T953 404 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CPZQ66K79 652 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PARM1Q6UWI2 310 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CHST15Q7LFX5 561 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 VTCN1Q7Z7D3 282 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SYNPOQ8N3V7 929 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 C12orf45Q8N5I9 185 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 POC5Q8NA72 575 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 OR5T3Q8NGG3 340 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CXorf40AQ8TE69 158 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZFP90Q8TF47 636 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MARS2Q96GW9 593 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PYURFQ96I23 114 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 KXD1Q9BQD3 176 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 EFCAB11Q9BUY7 163 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ING2Q9H160 280 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TTYH1Q9H313 450 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 VCX2Q9H322 139 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GAL3ST2Q9H3Q3 398 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF556Q9HAH1 456 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TPT1P8Q9HAU6 139 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PARD6AQ9NPB6 346 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SIRT7Q9NRC8 400 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 B3GNT2Q9NY97 397 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RDH8Q9NYR8 311 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 NLGN3Q9NZ94 848 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GSKIPQ9P0R6 139 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DYRK1BQ9Y463 629 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CFAP20Q9Y6A4 193 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 U3KQV3 271 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 A0A0C4DFX4 3053 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 A0A1W2PPV9 198 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 TMEM82A0PJX8 343 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 DUXAA6NLW8 204 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 C1QTNF3-AMACRE9PGA6 284 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 RBMXL2O75526 392 aaKnown RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 ADAP1O75689 374 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 ATE1O95260 518 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 HPRP00739 348 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 TGFB1P01137 390 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 FURINP09958 794 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 THRBP10828 461 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 PRKACGP22612 351 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 MC5RP33032 325 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 POLR2IP36954 125 aaKnown RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 KIR2DL1P43626 348 aaPredicted RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 CXCR4P61073 352 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 HBA1P69905 142 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF763Q0D2J5 394 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 SRSF5Q13243 272 aaKnown RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 CAMK2GQ13555 558 aaPredicted RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 LARS2Q15031 903 aaKnown RBP4.75□□□□□ -1.65
TMEM260-210ENST00000556422 CST6Q15828 149 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 SLC5A12Q1EHB4 618 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 MOGAT2Q3SYC2 334 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF14Q5SWL7 426 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 ATAD3CQ5T2N8 411 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF13Q5VWM6 474 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 FAM46CQ5VWP2 391 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 METRNLQ641Q3 311 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 KIAA1211LQ6NV74 962 aa4.75□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF621Q6ZSS3 439 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms