RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	GALNT6	Q8NCL4	622 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	OR51G2	Q8NGK0	314 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	GNPDA2	Q8TDQ7	276 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MRPL38	Q96DV4	380 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	WDFY2	Q96P53	400 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SARG	Q9BW04	601 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	B3GNT4	Q9C0J1	378 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MCOLN1	Q9GZU1	580 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	HINT3	Q9NQE9	182 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	COQ3	Q9NZJ6	369 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	USP36	Q9P275	1121 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	FBXL4	Q9UKA2	621 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PILRA	Q9UKJ1	303 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SSR3	Q9UNL2	185 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	NCKAP1	Q9Y2A7	1128 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TEX51	A0A1B0GUA7	166 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	ZNF670-ZNF695	F2Z2N8	137 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PRODH	O43272	600 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TSPAN9	O75954	239 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MRPL3	P09001	348 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	CLU	P10909	449 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	ALAS2	P22557	587 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	HNRNPA2B1	P22626	353 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	ATP6V1E1	P36543	226 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TAGLN	Q01995	201 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MLLT11	Q13015	90 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	CEBPE	Q15744	281 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	GLYR1	Q49A26	553 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PLBD1	Q6P4A8	553 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC36A4	Q6YBV0	504 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC37A2	Q8TED4	501 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PTCHD1	Q96NR3	888 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC23A1	Q9UHI7	598 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	FABP12	A6NFH5	140 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	CD8B2	A6NJW9	211 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	PLA2G10	O15496	165 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	CD8B	P10966	210 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	CEL	P19835	753 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	GCGR	P47871	477 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	WNT4	P56705	351 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	SUZ12	Q15022	739 aa	Known RBP	13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	LARS2	Q15031	903 aa	Known RBP	13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	PLET1	Q6UQ28	207 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	CD300LD	Q6UXZ3	194 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	OR9A4	Q8NGU2	314 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	LRRC20	Q8TCA0	184 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	MIXL1	Q9H2W2	232 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	LYAR	Q9NX58	379 aa	Known RBP	13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	KLHL28	Q9NXS3	571 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	SEC14L4	Q9UDX3	406 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	NUP50	Q9UKX7	468 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	NDRG2	Q9UN36	371 aa	Known RBP	13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	CYP8B1	Q9UNU6	501 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	HEBP2	Q9Y5Z4	205 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	SLC22A7	Q9Y694	548 aa		13.71	□□□□□ -0.22
DDX55-209	ENST00000542286	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	TRAV27	A0A087WT01	109 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR5K3	A6NET4	321 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	SNTN	A6NMZ2	147 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	SURF4	O15260	269 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	TSC22D2	O75157	780 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	REM1	O75628	298 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	RFPL3	O75679	317 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GYPB	P06028	91 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GABRG2	P18507	467 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GABRA3	P34903	492 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ANXA11	P50995	505 aa	Known RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	SLC16A1	P53985	500 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	MAT1A	Q00266	395 aa	Known RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GNA13	Q14344	377 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	NDUFAF6	Q330K2	333 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	HEPHL1	Q6MZM0	1159 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	THSD4	Q6ZMP0	1018 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	LAPTM4B	Q86VI4	370 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR2L13	Q8N349	312 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CYB561A3	Q8NBI2	242 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	POGLUT1	Q8NBL1	392 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR51A7	Q8NH64	312 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ACOT11	Q8WXI4	607 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	FAM131C	Q96AQ9	280 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	TM4SF19	Q96DZ7	209 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	B3GNT2	Q9NY97	397 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GLTP	Q9NZD2	209 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CPNE7	Q9UBL6	633 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	POLH	Q9Y253	713 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ALG5	Q9Y673	324 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CLCA3P	Q9Y6N3	262 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286		A0A1W2PQL4	384 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	MAGEB4	O15481	346 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	PDGFA	P04085	211 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CTRB1	P17538	263 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	HTR4	Q13639	388 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	KLHL12	Q53G59	568 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ZNF628	Q5EBL2	1059 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	DCST2	Q5T1A1	773 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CTRB2	Q6GPI1	263 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	GLCCI1	Q86VQ1	547 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	COX18	Q8N8Q8	333 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms