RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TUBA1CQ9BQE3 449 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 FAM107BQ9H098 131 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 ARMCX1Q9P291 453 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 SLC35A3Q9Y2D2 325 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 CAPN7Q9Y6W3 813 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 PCNX3Q9H6A9 2034 aa20.53■□□□□ 0.88
SFSWAP-204ENST00000535399 FAM47E-STBD1D6RA91 191 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 SLC22A2O15244 555 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 EPPINO95925 133 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 UBTFL6P0CB48 400 aaPredicted RBP20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 PEPDP12955 493 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 CLDN15P56746 228 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 KCNJ10P78508 379 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 CDSNQ15517 529 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 TOMM34Q15785 309 aaPredicted RBP20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 RPS26P11Q5JNZ5 115 aaPredicted RBP20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 GCNT6Q5T4J0 391 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 NSUN5P2Q63ZY6 315 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 SNX32Q86XE0 403 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 TMCO5AQ8N6Q1 288 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 RNF145Q96MT1 663 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 ANKRD27Q96NW4 1050 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 NSRP1Q9H0G5 558 aaKnown RBP20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 CORO2BQ9UQ03 480 aa20.52■□□□□ 0.88
SFSWAP-204ENST00000535399 NCOA6Q14686 2063 aaPredicted RBP20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 EVPLLA8MZ36 301 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 H0Y3Z8 333 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 H3BML4 177 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 SNX3O60493 162 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 CYP7B1O75881 506 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 NUDT14O95848 222 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 ARAFP10398 606 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 FOXF1Q12946 379 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 GNA13Q14344 377 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 SF3B4Q15427 424 aaKnown RBP eCLIP20.51■□□□□ 0.875e-13■■■■■ 44
SFSWAP-204ENST00000535399 MAPRE2Q15555 327 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 COQ5Q5HYK3 327 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 ADGRE4PQ86SQ3 457 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 CMIPQ8IY22 773 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 PEX5LQ8IYB4 626 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 SDCCAG3Q96C92 435 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 TRIM8Q9BZR9 551 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 BCL2L10Q9HD36 194 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 FAM53CQ9NYF3 392 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 AP4B1Q9Y6B7 739 aa20.51■□□□□ 0.87
SFSWAP-204ENST00000535399 A0A0G2JPF8 293 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 LOC100653049A0A140TA62 436 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 TMEM247A6NEH6 219 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CD8B2A6NJW9 211 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 BBIP1A8MTZ0 92 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 HNRNPCL2B2RXH8 293 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 HNRNPCL3B7ZW38 293 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 H0YC42 278 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 HNRNPCL1O60812 293 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CCDC22O60826 627 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 KRT34O76011 436 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 DBIP07108 87 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 HNRNPCL4P0DMR1 293 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 NID1P14543 1247 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CCR4P51679 360 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 SUCLG1P53597 346 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 TPD52P55327 224 aaPredicted RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CLDN20P56880 219 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CBFBQ13951 182 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 SELPLGQ14242 412 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CAPRIN1Q14444 709 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 TRMT5Q32P41 509 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 RIPPLY2Q5TAB7 128 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 PRAMEF8Q5VWM4 474 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 PRAMEF7Q5VXH5 474 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 REP15Q6BDI9 236 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 MAMDC2Q7Z304 686 aaPredicted RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 LACC1Q8IV20 430 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CCDC71Q8IV32 467 aaPredicted RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 WDR60Q8WVS4 1066 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CNOT9Q92600 299 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 TRIB1Q96RU8 372 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 THUMPD3Q9BV44 507 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 CALHM2Q9HA72 323 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 EXOSC3Q9NQT5 275 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 RNF6Q9Y252 685 aa20.5■□□□□ 0.87
SFSWAP-204ENST00000535399 A0A0G2JNJ9 132 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 FXYD1O00168 92 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 ETV2O00321 342 aaPredicted RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 TOXO94900 526 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 NTN1O95631 604 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 PRKCAP17252 672 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 EIF1P41567 113 aaKnown RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 MTPNP58546 118 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 ART3Q13508 389 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 QPRTQ15274 297 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 ADRM1Q16186 407 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 SLC25A53Q5H9E4 307 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 CPLX4Q7Z7G2 160 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 MTDHQ86UE4 582 aaKnown RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 VRK2Q86Y07 508 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 UBQLNLQ8IYU4 475 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 METTL25Q8N6Q8 603 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 OR52P1PQ8NH57 321 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 NFKBIDQ8NI38 313 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms