RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 COX16Q9P0S2 106 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 IFNKQ9P0W0 207 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 ASIC3Q9UHC3 531 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 HPCAL4Q9UM19 191 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 SPATA2Q9UM82 520 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 EIF3LQ9Y262 564 aaKnown RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 MRPS33Q9Y291 106 aaKnown RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 CPQQ9Y646 472 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 DDX60Q8IY21 1712 aaKnown RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 RGPD2P0DJD1 1756 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 TEX48A0A1B0GUV7 120 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 H0YHG0 523 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ARHGEF9O43307 516 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 OR1F1O43749 312 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 POP4O95707 220 aaKnown RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 TRIM49P0CI25 452 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 TRIM49CP0CI26 452 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 OXTRP30559 389 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 SPRP35270 261 aaPredicted RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 STK19P49842 368 aaPredicted RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 SARNPP82979 210 aaKnown RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 SLC39A6Q13433 755 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 LY6DQ14210 128 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 RAB35Q15286 201 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 MAPK6Q16659 721 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 CYBRD1Q53TN4 286 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ACER2Q5QJU3 275 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 FAM173BQ6P4H8 233 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 CATSPER3Q86XQ3 398 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 VSTM4Q8IW00 320 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 SPEM1Q8N4L4 309 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ZNF491Q8N8L2 437 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 LRRC15Q8TF66 581 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 SPRYD4Q8WW59 207 aaPredicted RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 SLC45A3Q96JT2 553 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 OPRPNQ99935 248 aaPredicted RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 KRTAP4-5Q9BYR2 181 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 TRIM6Q9C030 488 aaPredicted RBP6.04□□□□□ -1.44
LSM1-202ENST00000520286 COMMD4Q9H0A8 199 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 RHOJQ9H4E5 214 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ZDHHC18Q9NUE0 388 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 RNF14Q9UBS8 474 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 GGA2Q9UJY4 613 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ZNF831Q5JPB2 1677 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 ITGB4P16144 1822 aa6.04□□□□□ -1.44
LSM1-202ENST00000520286 MBLAC1A4D2B0 266 aaPredicted RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 ZSCAN5CA6NGD5 496 aaPredicted RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 LRRIQ3A6PVS8 624 aaPredicted RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 ANKRD65E5RJM6 399 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 SOCS3O14543 225 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 TNRC18O15417 2968 aaPredicted RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 STX10O60499 249 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 ZG16O60844 167 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 CAPGP40121 348 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 PTGER3P43115 390 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 BRCC3P46736 316 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 ATP12AP54707 1039 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 MFAP2P55001 183 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 SLC8A3P57103 927 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 HILS1P60008 231 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 VSNL1P62760 191 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 HNRNPA0Q13151 305 aaKnown RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 CCL14Q16627 93 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 HSP90B2PQ58FF3 399 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 LINC00242Q5T6M2 205 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 LCE1AQ5T7P2 110 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 SEL1L2Q5TEA6 688 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 SLX4IPQ5VYV7 408 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 FAM219BQ5XKK7 198 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 CCDC73Q6ZRK6 1079 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 ZCCHC7Q8N3Z6 543 aaKnown RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 PRSS33Q8NF86 280 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 NANPQ8TBE9 248 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 TAF15Q92804 592 aaKnown RBP eCLIP6.03□□□□□ -1.44
LSM1-202ENST00000520286 MOCOSQ96EN8 888 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 DNAJA3Q96EY1 480 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 POM121L2Q96KW2 1035 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 NFKBIZQ9BYH8 718 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 UTP6Q9NYH9 597 aaKnown RBP6.03□□□□□ -1.44
LSM1-202ENST00000520286 CFAP45Q9UL16 551 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 ADAMTSL1Q8N6G6 1762 aa6.03□□□□□ -1.44
LSM1-202ENST00000520286 FAM74A7A6NL05 159 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 C11orf98E9PRG8 122 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 EIF3HO15372 352 aaKnown RBP eCLIP6.02□□□□□ -1.45
LSM1-202ENST00000520286 TYROBPO43914 113 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 NEFHP12036 1026 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 UQCRC2P22695 453 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 NF2P35240 595 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 MAGEA5P43359 124 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 POU3F4P49335 361 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 PPT1P50897 306 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 RWDD2BP57060 319 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 GNG11P61952 73 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 CHI3L2Q15782 390 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 WHAMMP3Q1A5X7 153 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 FAM74A3Q4VXF1 159 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 PYHIN1Q6K0P9 492 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 LRRC70Q7Z2Q7 622 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 PARGQ86W56 976 aa6.02□□□□□ -1.45
LSM1-202ENST00000520286 OTUD6BQ8N6M0 293 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms